Error in DICOM Exporting

Stefania_Julian · June 3, 2018, 12:53am

Operating system: Mac IOS
Slicer version: 4.8.1 r26813
Expected behavior:
Actual behavior: Error occured in exporter.
Hello Im new in Slicer. Im trying to export TAC images I modified in Slicer. I need them in DICOM extension for another planning software. When I try to export them, the sign “Error occured in exporter.” If you could help me I would be very glad.

lassoan · June 3, 2018, 12:54am

Could you please send the application log (menu: Help / Report a bug) of a session where you attempted the export?

Stefania_Julian · June 3, 2018, 3:33pm

Is this what you refer to?

[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Session start time …: 2018-06-03 12:20:25
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Slicer version …: 4.8.1 (revision 26813) macosx-amd64 - installed
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Operating system …: Mac OS X / 10.13.4 / 17E199 - 64-bit
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Memory …: 4096 MB physical, 1024 MB virtual
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - CPU …: GenuineIntel Intel® Core™ i5-5250U CPU @ 1.60GHz, 2 cores, 4 logical processors
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 03.06.2018 12:20:25 [] (unknown:0) - Additional module paths …: (none)
[DEBUG][Python] 03.06.2018 12:20:32 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py:719) - Popen(%s, cwd=%s, universal_newlines=%s, shell=%s)
[DEBUG][Python] 03.06.2018 12:20:40 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 03.06.2018 12:20:41 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 03.06.2018 12:20:41 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 03.06.2018 12:20:30 [] (unknown:0) - Number of registered modules: 135
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “”, line 1, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py”, line 7, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - import SlicerWizard.ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/init.py”, line 42, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - from .ExtensionDescription import ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionDescription.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - from .ExtensionProject import ExtensionProject
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionProject.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - from .Utilities import detectEncoding
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/Utilities.py”, line 10, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - import git
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 82, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - refresh()
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 73, in refresh
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - if not Git.refresh(path=path):
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 230, in refresh
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - cls().version()
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 551, in
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 1010, in _call_process
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - return self.execute(call, **exec_kwargs)
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 821, in execute
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - raise GitCommandError(command, status, stderr_value, stdout_value)
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - git.exc.GitCommandError: Cmd(‘git’) failed due to: exit code(1)
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - cmdline: git version
[CRITICAL][Stream] 03.06.2018 12:20:32 [] (unknown:0) - stderr: ‘xcode-select: note: no developer tools were found at ‘/Applications/Xcode.app’, requesting install. Choose an option in the dialog to download the command line developer tools.’
[CRITICAL][Qt] 03.06.2018 12:20:32 [] (unknown:0) - loadSourceAsModule - Failed to load file “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py” as module “ExtensionWizard” !
[CRITICAL][Qt] 03.06.2018 12:20:32 [] (unknown:0) - Fail to instantiate module “ExtensionWizard”
[DEBUG][Qt] 03.06.2018 12:20:33 [] (unknown:0) - Number of instantiated modules: 134
[DEBUG][Qt] 03.06.2018 12:20:41 [] (unknown:0) - Number of loaded modules: 134
[DEBUG][Qt] 03.06.2018 12:20:41 [] (unknown:0) - Switch to module: “Welcome”
[CRITICAL][FD] 03.06.2018 12:20:52 [] (unknown:0) - 2018-06-03 12:20:52.076 Slicer[657:11674] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[DEBUG][Qt] 03.06.2018 12:20:55 [] (unknown:0) - Switch to module: “DICOM”
[DEBUG][Python] 03.06.2018 12:21:05 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:449) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 03.06.2018 12:21:06 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:489) - DICOMMultiVolumePlugin found 0 multivolumes!
[DEBUG][Python] 03.06.2018 12:21:06 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:162) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 03.06.2018 12:21:06 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:167) - DICOMMultiVolumePlugin found 0 multivolumes!
[INFO][Python] 03.06.2018 12:21:06 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:422) - Loading with imageIOName: GDCM
[INFO][Python] 03.06.2018 12:21:20 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:494) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[WARNING][Python] 03.06.2018 12:21:21 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:799) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:21:06 [] (unknown:0) - Loading with imageIOName: GDCM
[INFO][Stream] 03.06.2018 12:21:20 [] (unknown:0) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[CRITICAL][Stream] 03.06.2018 12:21:21 [] (unknown:0) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:21:26 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:21:26 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 12:22:03 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:22:03 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 12:22:07 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:22:07 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 12:22:27 [] (unknown:0) - starting storescp process
[INFO][Stream] 03.06.2018 12:22:27 [] (unknown:0) - (u’Starting /Applications/Slicer.app/Contents/bin/storescp with ‘, [‘11112’, ‘–accept-all’, ‘–output-directory’, u’/Users/stefania/Documents/SlicerDICOMDatabase/incoming’, ‘–exec-sync’, ‘–exec-on-reception’, u’/Applications/Slicer.app/Contents/bin/dcmdump --load-short --print-short --print-filename --search PatientName “/Users/stefania/Documents/SlicerDICOMDatabase/incoming/#f”’])
[INFO][Stream] 03.06.2018 12:22:27 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Starting
[INFO][Stream] 03.06.2018 12:22:27 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Running
[INFO][Stream] 03.06.2018 12:22:28 [] (unknown:0) - stopping DICOM process
[WARNING][Qt] 03.06.2018 12:22:28 [] (unknown:0) - QProcess: Destroyed while process is still running.
[INFO][Stream] 03.06.2018 12:22:28 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state NotRunning
[CRITICAL][Stream] 03.06.2018 12:22:28 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:22:28 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOM.py”, line 395, in onToggleListener
[CRITICAL][Stream] 03.06.2018 12:22:28 [] (unknown:0) - del slicer.dicomListener
[CRITICAL][Stream] 03.06.2018 12:22:28 [] (unknown:0) - AttributeError: dicomListener
[INFO][Stream] 03.06.2018 12:22:38 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:22:38 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 12:22:44 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:22:44 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Python] 03.06.2018 12:22:52 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:601) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_122252/ScalarVolume_7
[INFO][Stream] 03.06.2018 12:22:52 [] (unknown:0) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_122252/ScalarVolume_7
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “”, line 2, in
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py”, line 638, in export
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - exporter.export()
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScalarVolume.py”, line 128, in export
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - cliNode = slicer.cli.run(dicomWrite, None, cliparameters, wait_for_completion=True)
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 71, in run
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - node = createNode(module, parameters)
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 13, in createNode
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - setNodeParameters(node, parameters)
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 31, in setNodeParameters
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - node.SetParameterAsString(key, value)
[CRITICAL][Stream] 03.06.2018 12:22:52 [] (unknown:0) - TypeError: SetParameterAsString argument 2: (unicode conversion error)
[INFO][Python] 03.06.2018 12:23:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py:42) - Saving Image…
[INFO][Python] 03.06.2018 12:23:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py:42) - Saving Scene…
[INFO][Python] 03.06.2018 12:25:31 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py:42) - Making zip…
[INFO][Python] 03.06.2018 12:25:33 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py:42) - Making dicom reference file…
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - Saving Image…
[WARNING][Qt] 03.06.2018 12:23:26 [] (unknown:0) - libpng warning: iCCP: known incorrect sRGB profile
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - 0
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - something is none
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - 1
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - something is none
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - 2
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - something is none
[INFO][Stream] 03.06.2018 12:23:26 [] (unknown:0) - Saving Scene…
[INFO][Stream] 03.06.2018 12:25:31 [] (unknown:0) - Making zip…
[INFO][VTK] 03.06.2018 12:25:31 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding: /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/dicomExportEnVKb8/scene/scene.mrml
[INFO][VTK] 03.06.2018 12:25:31 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding rel: scene/scene.mrml
[INFO][VTK] 03.06.2018 12:25:31 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding: /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/dicomExportEnVKb8/scene/Data/4%3a%20TAC%20Altamirano1.nrrd
[INFO][VTK] 03.06.2018 12:25:31 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding rel: scene/Data/4%3a%20TAC%20Altamirano1.nrrd
[INFO][VTK] 03.06.2018 12:25:33 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding: /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/dicomExportEnVKb8/scene/Slicer Data Bundle Scene View.png
[INFO][VTK] 03.06.2018 12:25:33 [] (unknown:0) - Info: In /Users/kitware/Dashboards/Package/Slicer-481/Libs/MRML/Logic/vtkArchive.cxx, line 35
Zip: adding rel: scene/Slicer Data Bundle Scene View.png
[INFO][Stream] 03.06.2018 12:25:33 [] (unknown:0) - Making dicom reference file…
[INFO][Stream] 03.06.2018 12:25:33 [] (unknown:0) - (‘running: ‘, u’/Applications/Slicer.app/Contents/bin/dcmdump’, [’–print-all’, ‘–write-pixel’, u’/var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/dicomExportEnVKb8’, u’/Users/stefania/Documents/OsiriX Data/DATABASE.noindex/20000/17349.dcm’])
[INFO][Stream] 03.06.2018 12:25:33 [] (unknown:0) - stopping DICOM process
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - File “”, line 3, in
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py”, line 46, in export
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - success = self.createDICOMFileForScene()
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScene.py”, line 163, in createDICOMFileForScene
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - dump = str(dump) + candygram
[CRITICAL][Stream] 03.06.2018 12:25:33 [] (unknown:0) - UnicodeDecodeError: ‘ascii’ codec can’t decode byte 0xc1 in position 2477: ordinal not in range(128)
[CRITICAL][FD] 03.06.2018 12:31:42 [] (unknown:0) - 2018-06-03 12:31:42.452 Slicer[657:11674] modalSession has been exited prematurely - check for a reentrant call to endModalSession:

pieper · June 3, 2018, 3:54pm

It looks like you are trying to export the entire scene, but it’s running into an error possibly related to a non-ascii character.

But in any case, you probably don’t want to export the full scene because that will create a Slicer-specific file (technically it’s a secondary capture object that can be moved around as DICOM, but only another Slicer instance will be able to open the data from the private tags).

Since your goal is to send the modified data to another system, you should export the volume as a new series. Be sure it is associated with a subject and study in the subject hierarchy.

https://www.slicer.org/wiki/Documentation/Nightly/Modules/DICOM#DICOM_export

Stefania_Julian · June 3, 2018, 4:05pm

I did that, but it is not working.
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Session start time …: 2018-06-03 12:57:30
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Slicer version …: 4.8.1 (revision 26813) macosx-amd64 - installed
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Operating system …: Mac OS X / 10.13.4 / 17E199 - 64-bit
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Memory …: 4096 MB physical, 1024 MB virtual
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - CPU …: GenuineIntel Intel® Core™ i5-5250U CPU @ 1.60GHz, 2 cores, 4 logical processors
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Additional module paths …: (none)
[DEBUG][Python] 03.06.2018 12:57:38 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py:719) - Popen(%s, cwd=%s, universal_newlines=%s, shell=%s)
[DEBUG][Python] 03.06.2018 12:57:46 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 03.06.2018 12:57:47 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 03.06.2018 12:57:47 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 03.06.2018 12:57:36 [] (unknown:0) - Number of registered modules: 135
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “”, line 1, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py”, line 7, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - import SlicerWizard.ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/init.py”, line 42, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .ExtensionDescription import ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionDescription.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .ExtensionProject import ExtensionProject
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionProject.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .Utilities import detectEncoding
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/Utilities.py”, line 10, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - import git
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 82, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - refresh()
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 73, in refresh
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - if not Git.refresh(path=path):
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 230, in refresh
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - cls().version()
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 551, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 1010, in _call_process
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - return self.execute(call, **exec_kwargs)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 821, in execute
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - raise GitCommandError(command, status, stderr_value, stdout_value)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - git.exc.GitCommandError: Cmd(‘git’) failed due to: exit code(1)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - cmdline: git version
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - stderr: ‘xcode-select: note: no developer tools were found at ‘/Applications/Xcode.app’, requesting install. Choose an option in the dialog to download the command line developer tools.’
[CRITICAL][Qt] 03.06.2018 12:57:38 [] (unknown:0) - loadSourceAsModule - Failed to load file “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py” as module “ExtensionWizard” !
[CRITICAL][Qt] 03.06.2018 12:57:38 [] (unknown:0) - Fail to instantiate module “ExtensionWizard”
[DEBUG][Qt] 03.06.2018 12:57:38 [] (unknown:0) - Number of instantiated modules: 134
[DEBUG][Qt] 03.06.2018 12:57:47 [] (unknown:0) - Number of loaded modules: 134
[DEBUG][Qt] 03.06.2018 12:57:47 [] (unknown:0) - Switch to module: “Welcome”
[DEBUG][Qt] 03.06.2018 12:58:27 [] (unknown:0) - Switch to module: “DICOM”
[DEBUG][Python] 03.06.2018 12:58:36 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:449) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 03.06.2018 12:58:37 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:489) - DICOMMultiVolumePlugin found 0 multivolumes!
[DEBUG][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:162) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:167) - DICOMMultiVolumePlugin found 0 multivolumes!
[INFO][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:422) - Loading with imageIOName: GDCM
[INFO][Python] 03.06.2018 12:58:57 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:494) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[WARNING][Python] 03.06.2018 12:58:59 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:799) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:58:38 [] (unknown:0) - Loading with imageIOName: GDCM
[INFO][Stream] 03.06.2018 12:58:57 [] (unknown:0) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[CRITICAL][Stream] 03.06.2018 12:58:59 [] (unknown:0) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:59:30 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:59:30 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - starting storescp process
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - (u’Starting /Applications/Slicer.app/Contents/bin/storescp with ‘, [‘11112’, ‘–accept-all’, ‘–output-directory’, u’/Users/stefania/Documents/SlicerDICOMDatabase/incoming’, ‘–exec-sync’, ‘–exec-on-reception’, u’/Applications/Slicer.app/Contents/bin/dcmdump --load-short --print-short --print-filename --search PatientName “/Users/stefania/Documents/SlicerDICOMDatabase/incoming/#f”’])
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Starting
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Running
[DEBUG][Python] 03.06.2018 13:00:23 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:449) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:489) - DICOMMultiVolumePlugin found 0 multivolumes!
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:162) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:167) - DICOMMultiVolumePlugin found 0 multivolumes!
[INFO][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:422) - Loading with imageIOName: GDCM
[INFO][Python] 03.06.2018 13:00:43 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:494) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1_1
[WARNING][Python] 03.06.2018 13:00:44 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:799) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 13:00:26 [] (unknown:0) - Loading with imageIOName: GDCM
[INFO][Stream] 03.06.2018 13:00:43 [] (unknown:0) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1_1
[CRITICAL][Stream] 03.06.2018 13:00:44 [] (unknown:0) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 13:01:00 [] (unknown:0) - stopping DICOM process
[WARNING][Qt] 03.06.2018 13:01:00 [] (unknown:0) - QProcess: Destroyed while process is still running.
[INFO][Stream] 03.06.2018 13:01:00 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state NotRunning
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOM.py”, line 395, in onToggleListener
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - del slicer.dicomListener
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - AttributeError: dicomListener
[CRITICAL][FD] 03.06.2018 13:01:15 [] (unknown:0) - 2018-06-03 13:01:15.433 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[DEBUG][Qt] 03.06.2018 13:01:47 [] (unknown:0) - Switch to module: “SegmentEditor”
[DEBUG][Qt] 03.06.2018 13:01:58 [] (unknown:0) - Switch to module: “Models”
[DEBUG][Qt] 03.06.2018 13:02:02 [] (unknown:0) - Switch to module: “Volumes”
[WARNING][Qt] 03.06.2018 13:02:02 [] (unknown:0) - ctkDoubleRangeSlider::setSingleStep( 100 ) is outside of valid bounds.
[WARNING][Qt] 03.06.2018 13:02:02 [] (unknown:0) - ctkRangeWidget::setSingleStep( 100 ) is outside valid bounds
[WARNING][Qt] 03.06.2018 13:02:07 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:09 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:09 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:14 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:14 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[DEBUG][Qt] 03.06.2018 13:02:21 [] (unknown:0) - Switch to module: “Data”
[WARNING][Qt] 03.06.2018 13:02:21 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[CRITICAL][FD] 03.06.2018 13:03:13 [] (unknown:0) - 2018-06-03 13:03:13.582 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 03.06.2018 13:03:35 [] (unknown:0) - 2018-06-03 13:03:35.289 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[INFO][Python] 03.06.2018 13:04:10 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:601) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_130410/ScalarVolume_7
[INFO][Stream] 03.06.2018 13:04:10 [] (unknown:0) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_130410/ScalarVolume_7
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “”, line 2, in
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py”, line 638, in export
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - exporter.export()
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScalarVolume.py”, line 128, in export
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - cliNode = slicer.cli.run(dicomWrite, None, cliparameters, wait_for_completion=True)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 71, in run
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - node = createNode(module, parameters)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 13, in createNode
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - setNodeParameters(node, parameters)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 31, in setNodeParameters
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - node.SetParameterAsString(key, value)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - TypeError: SetParameterAsString argument 2: (unicode conversion error)
[CRITICAL][FD] 03.06.2018 13:04:17 [] (unknown:0) - 2018-06-03 13:04:17.102 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:

Stefania_Julian · June 3, 2018, 4:51pm

I tried to do that, but algo Error comes out.
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Session start time …: 2018-06-03 12:57:30
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Slicer version …: 4.8.1 (revision 26813) macosx-amd64 - installed
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Operating system …: Mac OS X / 10.13.4 / 17E199 - 64-bit
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Memory …: 4096 MB physical, 1024 MB virtual
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - CPU …: GenuineIntel Intel® Core™ i5-5250U CPU @ 1.60GHz, 2 cores, 4 logical processors
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 03.06.2018 12:57:30 [] (unknown:0) - Additional module paths …: (none)
[DEBUG][Python] 03.06.2018 12:57:38 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py:719) - Popen(%s, cwd=%s, universal_newlines=%s, shell=%s)
[DEBUG][Python] 03.06.2018 12:57:46 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 03.06.2018 12:57:47 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 03.06.2018 12:57:47 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 03.06.2018 12:57:36 [] (unknown:0) - Number of registered modules: 135
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “”, line 1, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py”, line 7, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - import SlicerWizard.ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/init.py”, line 42, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .ExtensionDescription import ExtensionDescription
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionDescription.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .ExtensionProject import ExtensionProject
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/ExtensionProject.py”, line 6, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - from .Utilities import detectEncoding
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/SlicerWizard/Utilities.py”, line 10, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - import git
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 82, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - refresh()
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/init.py”, line 73, in refresh
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - if not Git.refresh(path=path):
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 230, in refresh
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - cls().version()
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 551, in
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - return lambda *args, **kwargs: self._call_process(name, *args, **kwargs)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 1010, in _call_process
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - return self.execute(call, **exec_kwargs)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python2.7/site-packages/git/cmd.py”, line 821, in execute
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - raise GitCommandError(command, status, stderr_value, stdout_value)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - git.exc.GitCommandError: Cmd(‘git’) failed due to: exit code(1)
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - cmdline: git version
[CRITICAL][Stream] 03.06.2018 12:57:38 [] (unknown:0) - stderr: ‘xcode-select: note: no developer tools were found at ‘/Applications/Xcode.app’, requesting install. Choose an option in the dialog to download the command line developer tools.’
[CRITICAL][Qt] 03.06.2018 12:57:38 [] (unknown:0) - loadSourceAsModule - Failed to load file “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/ExtensionWizard.py” as module “ExtensionWizard” !
[CRITICAL][Qt] 03.06.2018 12:57:38 [] (unknown:0) - Fail to instantiate module “ExtensionWizard”
[DEBUG][Qt] 03.06.2018 12:57:38 [] (unknown:0) - Number of instantiated modules: 134
[DEBUG][Qt] 03.06.2018 12:57:47 [] (unknown:0) - Number of loaded modules: 134
[DEBUG][Qt] 03.06.2018 12:57:47 [] (unknown:0) - Switch to module: “Welcome”
[DEBUG][Qt] 03.06.2018 12:58:27 [] (unknown:0) - Switch to module: “DICOM”
[DEBUG][Python] 03.06.2018 12:58:36 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:449) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 03.06.2018 12:58:37 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:489) - DICOMMultiVolumePlugin found 0 multivolumes!
[DEBUG][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:162) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:167) - DICOMMultiVolumePlugin found 0 multivolumes!
[INFO][Python] 03.06.2018 12:58:38 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:422) - Loading with imageIOName: GDCM
[INFO][Python] 03.06.2018 12:58:57 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:494) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[WARNING][Python] 03.06.2018 12:58:59 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:799) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:58:38 [] (unknown:0) - Loading with imageIOName: GDCM
[INFO][Stream] 03.06.2018 12:58:57 [] (unknown:0) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1
[CRITICAL][Stream] 03.06.2018 12:58:59 [] (unknown:0) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 12:59:30 [] (unknown:0) - selected row 0
[INFO][Stream] 03.06.2018 12:59:30 [] (unknown:0) - Today: TAC Altamirano1 for ALTAMIRANO ^DANIELA ANABEL
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - starting storescp process
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - (u’Starting /Applications/Slicer.app/Contents/bin/storescp with ‘, [‘11112’, ‘–accept-all’, ‘–output-directory’, u’/Users/stefania/Documents/SlicerDICOMDatabase/incoming’, ‘–exec-sync’, ‘–exec-on-reception’, u’/Applications/Slicer.app/Contents/bin/dcmdump --load-short --print-short --print-filename --search PatientName “/Users/stefania/Documents/SlicerDICOMDatabase/incoming/#f”’])
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Starting
[INFO][Stream] 03.06.2018 13:00:12 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state Running
[DEBUG][Python] 03.06.2018 13:00:23 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:449) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:489) - DICOMMultiVolumePlugin found 0 multivolumes!
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:162) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/MultiVolumeImporterPlugin.py:167) - DICOMMultiVolumePlugin found 0 multivolumes!
[INFO][Python] 03.06.2018 13:00:26 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:422) - Loading with imageIOName: GDCM
[INFO][Python] 03.06.2018 13:00:43 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:494) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1_1
[WARNING][Python] 03.06.2018 13:00:44 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:799) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 13:00:26 [] (unknown:0) - Loading with imageIOName: GDCM
[INFO][Stream] 03.06.2018 13:00:43 [] (unknown:0) - Window/level found in DICOM tags (center=350.0, width=2700.0) has been applied to volume 4: TAC Altamirano1_1
[CRITICAL][Stream] 03.06.2018 13:00:44 [] (unknown:0) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000404771 mm, tolerance threshold is 0.001 mm).
[INFO][Stream] 03.06.2018 13:01:00 [] (unknown:0) - stopping DICOM process
[WARNING][Qt] 03.06.2018 13:01:00 [] (unknown:0) - QProcess: Destroyed while process is still running.
[INFO][Stream] 03.06.2018 13:01:00 [] (unknown:0) - process /Applications/Slicer.app/Contents/bin/storescp now in state NotRunning
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOM.py”, line 395, in onToggleListener
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - del slicer.dicomListener
[CRITICAL][Stream] 03.06.2018 13:01:00 [] (unknown:0) - AttributeError: dicomListener
[CRITICAL][FD] 03.06.2018 13:01:15 [] (unknown:0) - 2018-06-03 13:01:15.433 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[DEBUG][Qt] 03.06.2018 13:01:47 [] (unknown:0) - Switch to module: “SegmentEditor”
[DEBUG][Qt] 03.06.2018 13:01:58 [] (unknown:0) - Switch to module: “Models”
[DEBUG][Qt] 03.06.2018 13:02:02 [] (unknown:0) - Switch to module: “Volumes”
[WARNING][Qt] 03.06.2018 13:02:02 [] (unknown:0) - ctkDoubleRangeSlider::setSingleStep( 100 ) is outside of valid bounds.
[WARNING][Qt] 03.06.2018 13:02:02 [] (unknown:0) - ctkRangeWidget::setSingleStep( 100 ) is outside valid bounds
[WARNING][Qt] 03.06.2018 13:02:07 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:09 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:09 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:14 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[WARNING][Qt] 03.06.2018 13:02:14 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[DEBUG][Qt] 03.06.2018 13:02:21 [] (unknown:0) - Switch to module: “Data”
[WARNING][Qt] 03.06.2018 13:02:21 [] (unknown:0) - QPixmap::scaled: Pixmap is a null pixmap
[CRITICAL][FD] 03.06.2018 13:03:13 [] (unknown:0) - 2018-06-03 13:03:13.582 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[CRITICAL][FD] 03.06.2018 13:03:35 [] (unknown:0) - 2018-06-03 13:03:35.289 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
[INFO][Python] 03.06.2018 13:04:10 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py:601) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_130410/ScalarVolume_7
[INFO][Stream] 03.06.2018 13:04:10 [] (unknown:0) - Export scalar volume ‘4: TAC Altamirano1’ to directory /var/folders/02/xlz1btn17819djv59_ntjzqm0000gn/T/Slicer-stefania/DICOMExportTemp_20180603_130410/ScalarVolume_7
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “”, line 2, in
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMScalarVolumePlugin.py”, line 638, in export
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - exporter.export()
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Slicer-4.8/qt-scripted-modules/DICOMLib/DICOMExportScalarVolume.py”, line 128, in export
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - cliNode = slicer.cli.run(dicomWrite, None, cliparameters, wait_for_completion=True)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 71, in run
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - node = createNode(module, parameters)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 13, in createNode
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - setNodeParameters(node, parameters)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - File “/Applications/Slicer.app/Contents/bin/Python/slicer/cli.py”, line 31, in setNodeParameters
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - node.SetParameterAsString(key, value)
[CRITICAL][Stream] 03.06.2018 13:04:10 [] (unknown:0) - TypeError: SetParameterAsString argument 2: (unicode conversion error)
[CRITICAL][FD] 03.06.2018 13:04:17 [] (unknown:0) - 2018-06-03 13:04:17.102 Slicer[790:59302] modalSession has been exited prematurely - check for a reentrant call to endModalSession:

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Error in DICOM Exporting

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