Problem report for Slicer 4.11.0-2020-03-15 win-amd64: [please describe expected and actual behavior]
This error has happened several times in the last week. I have tried downloading the new preview versions of Slicer, but I am still getting this error. First, I can no longer read in a .nrrd file as a Volume Sequence, only a Volume. The preview options for editing the segment (grow from seeds,etc.) are no longer available. After I read in a .nrrd file, I went to Segmentations>Create New Segment>Edit Selected. Each time there is an error, I am either using the Scissors tool or the Islands tool to remove sections of the scan I do not need. The program starts to work, then puts out this error. If I accept the error and continue, it will not allow me to save any of the work done. Once I close the program, a second window pops up with several phrases like “vtkDebugLeaks has detected LEAKS!” I have a screenshot of both errors.
Log file:
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Session start time …: 2020-03-23 11:18:41
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Slicer version …: 4.11.0-2020-03-15 (revision 5266433) win-amd64 - installed release
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Operating system …: Windows / Personal / (Build 18362, Code Page 65001) - 64-bit
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Memory …: 16210 MB physical, 23330 MB virtual
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - CPU …: GenuineIntel , 12 cores, 12 logical processors
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Qt configuration …: version 5.10.1, with SSL, requested OpenGL 3.2 (compatibility profile)
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Application path …: C:/Users/kassy/AppData/Local/NA-MIC/Slicer 4.11.0-2020-03-15/bin
[DEBUG][Qt] 23.03.2020 11:18:41 [] (unknown:0) - Additional module paths …: (none)
[DEBUG][Python] 23.03.2020 11:18:45 [Python] (C:\Users\kassy\AppData\Local\NA-MIC\Slicer 4.11.0-2020-03-15\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 23.03.2020 11:18:45 [Python] (C:\Users\kassy\AppData\Local\NA-MIC\Slicer 4.11.0-2020-03-15\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 23.03.2020 11:18:45 [Python] (C:\Users\kassy\AppData\Local\NA-MIC\Slicer 4.11.0-2020-03-15\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 23.03.2020 11:18:46 [] (unknown:0) - Switch to module: “Welcome”
[INFO][VTK] 23.03.2020 11:19:10 [vtkMRMLVolumeArchetypeStorageNode (000001DB2D80D7E0)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:471) - Loaded volume from file: D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan13_7-3.nrrd. Dimensions: 848x496x1642. Number of components: 1. Pixel type: unsigned char.
[DEBUG][Qt] 23.03.2020 11:19:10 [] (unknown:0) - “Volume” Reader has successfully read the file “D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan13_7-3.nrrd” “[4.23s]”
[DEBUG][Qt] 23.03.2020 11:19:26 [] (unknown:0) - Switch to module: “Segmentations”
[DEBUG][Qt] 23.03.2020 11:19:31 [] (unknown:0) - Switch to module: “SegmentEditor”
[DEBUG][Qt] 23.03.2020 11:22:42 [] (unknown:0) - Switch to module: “Segmentations”
[CRITICAL][Qt] 23.03.2020 11:22:44 [] (unknown:0) - double __cdecl qSlicerSubjectHierarchyFolderPlugin::canOwnSubjectHierarchyItem(__int64) const : Input item is invalid
[ERROR][VTK] 23.03.2020 11:22:44 [vtkMRMLSubjectHierarchyNode (000001DB135468C0)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLSubjectHierarchyNode.cxx:2057) - GetItemDataNode: Failed to find subject hierarchy item by ID 0
[CRITICAL][Qt] 23.03.2020 11:22:46 [] (unknown:0) - double __cdecl qSlicerSubjectHierarchyFolderPlugin::canOwnSubjectHierarchyItem(__int64) const : Input item is invalid
[ERROR][VTK] 23.03.2020 11:22:46 [vtkMRMLSubjectHierarchyNode (000001DB135468C0)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLSubjectHierarchyNode.cxx:2057) - GetItemDataNode: Failed to find subject hierarchy item by ID 0
[INFO][VTK] 23.03.2020 11:24:46 [vtkMRMLVolumeArchetypeStorageNode (000001DCA2E4E980)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:471) - Loaded volume from file: D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan14_1-3.nrrd. Dimensions: 520x932x1490. Number of components: 1. Pixel type: unsigned char.
[DEBUG][Qt] 23.03.2020 11:24:46 [] (unknown:0) - “Volume” Reader has successfully read the file “D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan14_1-3.nrrd” “[4.49s]”
[DEBUG][Qt] 23.03.2020 11:24:53 [] (unknown:0) - Switch to module: “SegmentEditor”
[DEBUG][Qt] 23.03.2020 11:30:49 [] (unknown:0) - Switch to module: “Segmentations”
[CRITICAL][Qt] 23.03.2020 11:30:51 [] (unknown:0) - double __cdecl qSlicerSubjectHierarchyFolderPlugin::canOwnSubjectHierarchyItem(__int64) const : Input item is invalid
[ERROR][VTK] 23.03.2020 11:30:51 [vtkMRMLSubjectHierarchyNode (000001DB2E31D640)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLSubjectHierarchyNode.cxx:2057) - GetItemDataNode: Failed to find subject hierarchy item by ID 0
[INFO][VTK] 23.03.2020 11:33:11 [vtkMRMLVolumeArchetypeStorageNode (000001DC933759D0)] (D:\D\P\Slicer-0\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:471) - Loaded volume from file: D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan14_2-D.nrrd. Dimensions: 680x1040x1700. Number of components: 1. Pixel type: unsigned char.
[DEBUG][Qt] 23.03.2020 11:33:11 [] (unknown:0) - “Volume” Reader has successfully read the file “D:/Dropbox/Dissertation GMM work/NRRD FILES/GMCan14_2-D.nrrd” “[7.41s]”
[DEBUG][Qt] 23.03.2020 11:33:44 [] (unknown:0) - Switch to module: “SegmentEditor”
[CRITICAL][Qt] 23.03.2020 11:37:14 [] (unknown:0) - “Slicer has caught an internal error.\n\nYou may be able to continue from this point, but results are undefined.\n\nSuggested action is to save your work and restart.\n\nIf you have a repeatable sequence of steps that causes this message, please report the issue following instructions available at http://slicer.org\n\n\nThe message detail is:\n\nException thrown in event: bad allocation”
[DEBUG][Qt] 23.03.2020 11:37:58 [] (unknown:0) - Switch to module: “”