Error while using Total Segmentor

Support
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1

Traceback (most recent call last):
File “C:\Users\INSPIRE01\AppData\Local\NA-MIC\Slicer 5.2.2\bin\Python\slicer\util.py”, line 2967, in tryWithErrorDisplay
yield
File “C:/Users/INSPIRE01/AppData/Local/NA-MIC/Slicer 5.2.2/NA-MIC/Extensions-31382/TotalSegmentator/lib/Slicer-5.2/qt-scripted-modules/TotalSegmentator.py”, line 271, in onApplyButton
self.logic.process(self.ui.inputVolumeSelector.currentNode(), self.ui.outputSegmentationSelector.currentNode(),
File “C:/Users/INSPIRE01/AppData/Local/NA-MIC/Slicer 5.2.2/NA-MIC/Extensions-31382/TotalSegmentator/lib/Slicer-5.2/qt-scripted-modules/TotalSegmentator.py”, line 859, in process
self.logProcessOutput(proc)
File “C:/Users/INSPIRE01/AppData/Local/NA-MIC/Slicer 5.2.2/NA-MIC/Extensions-31382/TotalSegmentator/lib/Slicer-5.2/qt-scripted-modules/TotalSegmentator.py”, line 697, in logProcessOutput
raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command ‘[‘C:/Users/INSPIRE01/AppData/Local/NA-MIC/Slicer 5.2.2/bin/…/bin\PythonSlicer.EXE’, ‘C:\Users\INSPIRE01\AppData\Local\NA-MIC\Slicer 5.2.2\lib\Python\Scripts\TotalSegmentator’, ‘-i’, ‘C:/Users/INSPIRE01/AppData/Local/Temp/Slicer/__SlicerTemp__2024-05-05_07+24+30.600/total-segmentator-input.nii’, ‘-o’, ‘C:/Users/INSPIRE01/AppData/Local/Temp/Slicer/__SlicerTemp__2024-05-05_07+24+30.600/segmentation’, ‘–ml’, ‘–task’, ‘total’, ‘–fast’]’ returned non-zero exit status 2.

I keep getting this error while trying to use TotalSegmentor. PyTorch is installed properly.

2

Please try with latest Slicer stable (currently 5.6.1) which you can download from https://download.slicer.org/. There have been updates to the latest TotalSegmentator that are available in the latest stable release that are not in the older Slicer 5.2.2 that you are using. Please report back after trying the latest Slicer stable version.