Operating system: ubuntu 16.04
Slicer version: 4.7.0-2017-3-12 and 4.7.0-2017-4-13
Expected behavior: extension manager opens & view controller shows red/yellow/green slice controls
Actual behavior: invoking extension manger crashes slicer.
tried clearing old configs etc but no love.
also when slicer does load without invoking ext mngr only red slice controller appears in view controller.
yellow and green only accessible via layout controls.
turning off/on module panel doesn’t clear it.
For me Extension manager works without problems in latest nightly version on a Ubuntu 16.04 virtual machine on HyperV.
It is normal that you select view layout (which viewers are displayed, where) using the layout toolbar button. You can enable saving of current layout in menu: Edit / Application settings / Appearance / Save user interface… checkbox. It only saves the selection if you exit Slicer, not if it crashes.
Could you attach the application log of a crashed session? (menu: Help / Report a bug, choose the previous session in the “Recent log files” listbox).
1 Like
it crashes with todays version 4-15-2017:
toddr@redshirt:~/Software/Slicer-4.7.0-2017-04-15-linux-amd64$ ./Slicer &
[1] 32736
toddr@redshirt:~/Software/Slicer-4.7.0-2017-04-15-linux-amd64$ Number of registered modules: 140
Number of instantiated modules: 140
When loading module "CLIEventTest" , the dependency "CLI4Test" failed to be loaded.
Initializing terminology mapping for map file /home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/share/Slicer-4.7/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
288 terms were read for Slicer LUT GenericAnatomyColors
When loading module "TwoCLIsInARowTest" , the dependency "CLI4Test" failed to be loaded.
When loading module "TwoCLIsInParallelTest" , the dependency "CLI4Test" failed to be loaded.
Number of loaded modules: 137
Switch to module: "Welcome"
error: [/home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/./bin/SlicerApp-real] exit abnormally - Report the problem.
[1]+ Exit 1 ./Slicer
and the previous log shows the load but not the crash. see below:
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Session start time .......: 2017-04-17 09:52:10
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Slicer version ...........: 4.7.0-2017-04-15 (revision 25933) linux-amd64 - installed
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Operating system .........: Linux / 4.4.0-71-generic / #92-Ubuntu SMP Fri Mar 24 12:59:01 UTC 2017 - 64-bit
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Memory ...................: 128907 MB physical, 131036 MB virtual
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - CPU ......................: GenuineIntel Intel(R) Xeon(R) CPU E5-2667 v2 @ 3.30GHz, 16 cores, 32 logical processors
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Developer mode enabled ...: no
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Prefer executable CLI ....: yes
[DEBUG][Qt] 17.04.2017 09:52:10 [] (unknown:0) - Additional module paths ..: (none)
[DEBUG][Python] 17.04.2017 09:52:15 '[Python]' (/home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 17.04.2017 09:52:16 [Python] (/home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 17.04.2017 09:52:16 [Python] (/home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 17.04.2017 09:52:11 [] (unknown:0) - Number of registered modules: 140
[DEBUG][Qt] 17.04.2017 09:52:12 [] (unknown:0) - Number of instantiated modules: 140
[WARNING][Qt] 17.04.2017 09:52:15 [] (unknown:0) - When loading module "CLIEventTest" , the dependency "CLI4Test" failed to be loaded.
[INFO][Stream] 17.04.2017 09:52:15 [] (unknown:0) - Initializing terminology mapping for map file /home/toddr/Software/Slicer-4.7.0-2017-04-15-linux-amd64/share/Slicer-4.7/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
[INFO][Stream] 17.04.2017 09:52:15 [] (unknown:0) - 288 terms were read for Slicer LUT GenericAnatomyColors
[WARNING][Qt] 17.04.2017 09:52:16 [] (unknown:0) - When loading module "TwoCLIsInARowTest" , the dependency "CLI4Test" failed to be loaded.
[WARNING][Qt] 17.04.2017 09:52:16 [] (unknown:0) - When loading module "TwoCLIsInParallelTest" , the dependency "CLI4Test" failed to be loaded.
[DEBUG][Qt] 17.04.2017 09:52:16 [] (unknown:0) - Number of loaded modules: 137
[DEBUG][Qt] 17.04.2017 09:52:16 [] (unknown:0) - Switch to module: "Welcome"
tried with mac version on laptop got same result. here is the bug report:
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Session start time .......: 2017-04-17 15:05:04
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Slicer version ...........: 4.7.0-2017-04-15 (revision 25933) macosx-amd64 - installed
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Operating system .........: Mac OS X / 10.10.5 / 14F2315 - 64-bit
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Memory ...................: 16384 MB physical, 8192 MB virtual
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - CPU ......................: GenuineIntel Intel(R) Core(TM) i7-4960HQ CPU @ 2.60GHz, 4 cores, 8 logical processors
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Developer mode enabled ...: no
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Prefer executable CLI ....: yes
[DEBUG][Qt] 17.04.2017 15:05:04 [] (unknown:0) - Additional module paths ..: (none)
[DEBUG][Python] 17.04.2017 15:05:12 '[Python]' (/Applications/Slicer_dev4p7_4-15-2017.app/Contents/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 17.04.2017 15:05:13 [Python] (/Applications/Slicer_dev4p7_4-15-2017.app/Contents/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 17.04.2017 15:05:13 [Python] (/Applications/Slicer_dev4p7_4-15-2017.app/Contents/lib/Slicer-4.7/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 17.04.2017 15:05:07 [] (unknown:0) - Number of registered modules: 140
[DEBUG][Qt] 17.04.2017 15:05:08 [] (unknown:0) - Number of instantiated modules: 140
[WARNING][Qt] 17.04.2017 15:05:12 [] (unknown:0) - When loading module "CLIEventTest" , the dependency "CLI4Test" failed to be loaded.
[INFO][Stream] 17.04.2017 15:05:12 [] (unknown:0) - Initializing terminology mapping for map file /Applications/Slicer_dev4p7_4-15-2017.app/Contents/share/Slicer-4.7/ColorFiles/Terminology//GenericAnatomyColors-SNOMED.csv
[INFO][Stream] 17.04.2017 15:05:12 [] (unknown:0) - 288 terms were read for Slicer LUT GenericAnatomyColors
[WARNING][Qt] 17.04.2017 15:05:13 [] (unknown:0) - When loading module "TwoCLIsInARowTest" , the dependency "CLI4Test" failed to be loaded.
[WARNING][Qt] 17.04.2017 15:05:13 [] (unknown:0) - When loading module "TwoCLIsInParallelTest" , the dependency "CLI4Test" failed to be loaded.
[DEBUG][Qt] 17.04.2017 15:05:13 [] (unknown:0) - Number of loaded modules: 137
[DEBUG][Qt] 17.04.2017 15:05:13 [] (unknown:0) - Switch to module: "Welcome"
clicking on download plugins causes crash.
Thank you for your reports. There is nothing suspicious in the logs.
Could you send a backtrace of the crash?
(https://www.slicer.org/wiki/Documentation/Nightly/Developers/Tutorials/Debug_Instructions#Analyze_a_segmentation_fault)
Are there other ways you can crash Slicer (loading data, running CLI modules, etc)?
Does a web browser appear if you run the following code in the Slicer Python console (Ctrl + 3)?
w=qt.QWebView(); w.setUrl(qt.QUrl('http://www.google.com')); w.show()
before i do all that, are we sure this is not related to thread 168
NA-MIC site down?
j
The appstore is not related to the NA-MIC wiki, so you can go ahead with your testing.
i found the problem, i deleted the .config/NA-MIC directory and started fresh and now everything works again.
seems there was a conflict with something in the .ini or past extensions… thats as far as i got. j