FastSurfer: Problem running with multiple subjects

Support
1

I am running FastSufer for multiple subjects, but I don’t get it whether the problem is with the ‘–entrypoint’ flag or docker.

(base) user1nrx@srv-imgrm-04:~/software_research/my_fastsurfer_analysis/DATA$ sudo docker run --gpus all -v /home/user1nrx/software_research/my_fastsurfer_analysis/DATA:/data -v /home/user1nrx/software_research/my_fastsurfer_analysis/OUTPUT:/output -v /home/user1nrx/software_research/my_fastsurfer_analysis/freesurfer_license:/fs_license --entrypoint "/fastsurfer/brun_fastsurfer.sh" --rm --user $(id -u):$(id -g) deepmi/fastsurfer:latest --fs_license /fs_license/license.txt --sd /output --subject_list /data/subjects_list.txt --parallel --3T


INFO: run_fastsurfer not explicitly specified, using $FASTSURFER_HOME/run_fastsurfer.sh.
ERROR: Flag unrecognized.
2

You should probably check with the freesurfer/fastsurfer team for help with this.