Having Trouble Extracting Ultrasound DICOM/Vol file from GE Voluson S8

d_roscoe_j · June 18, 2021, 6:52pm

I’m attempting to create a 3d model of a 3d ultrasound .dcm file that I’d asked a 3d sonographer to extract, (for 3d printing) but all that is appearing when uploading to slicer is a 2d image of the ultrasound (in .dcm format)

She is using a GE Voluson S8 machine for the task, and doesn’t know how to extract the volume file I am needing… any advice or instruction for what to ask/tell her?

Thanks!

Operating system: GE Voluson S8
Slicer version: 4.11.20200930
Expected behavior: Loading 3d Volume from .dcm file
Actual behavior: Loading a 2d image from .dcm file

lassoan · June 18, 2021, 8:40pm

GE 3D ultrasound machines only store a 2D screenshot in standard DICOM image field and use private fields for the 3D volume. You can use SlicerHeart extension to load the 3D information (it will require you to request the image decoder pack from GE, by filling out a web form).

d_roscoe_j · June 18, 2021, 8:48pm

So I, as the person doing the slicing, can use the SlicerHeart extension (and the image decoder pack from GE) to load 3d information from these seemingly 2D .dcm files the woman who took the ultrasounds sent over?
The files are all around 2000 KB, which seems low for having 3d vol information, but is that decoder pack a means of “reading between the lines” of the 2D screenshotted .dcm file to get the 3d volume?

Or is that decoder pack something SHE would need on her end to get the right information out of the machine to send over to me for slicing?

Just making sure I understand.
Really appreciate your help! Thanks!

lassoan · June 18, 2021, 9:12pm

You need to have the decoder (not the patient or the ultrasound technologist).

2000KB seems to be a bit small, but it may contain a smaller region or lower resolution image. Size of a single 3D ultrasound volume is typically 3-5MB.

Roxxx · February 10, 2023, 10:19am

I have the same output view as seen in the first post when using SlicerHeart.
I could not find the image decoder pack from GE you mention. Do you happen to have a URL of the web form?

Jeff_Beckman · April 11, 2023, 3:52pm

I’m in the same boat and may have found the solution. There are directions including a link to the required web form on this page in the docs:

github.com

SlicerHeart/SlicerHeart/blob/master/Docs/ImageImportExport.md

# Importing DICOM files

While DICOM standard specifies how 3D and 4D (3D+t) ultrasound volumes can be stored in standard fields, most ultrasound manufacturers do not follow this standard. Typically, only 2D screenshots or 2D+t screen capture videos are stored in standard fields. 3D information is stored in private fields and proprietary algorithms are needed to interpret them.

## Open Image3D API

[Image3D API](https://github.com/MedicalUltrasound/Image3dAPI) can be used to read 3D ultrasound images from GE, Canon, Hitachi, Siemens, and Philips scanners. This API is only avaialble on Windows and a reader library must be obtained from the scanner's manufacturer and installed on the system (by registering the reader by running `regsvr32 (loaderlibraryname).dll` as an administrator). This API can provide access to all kinds of image data and ECG signal. File can be read by renaming it so that it ends with `.3dus` and drag-and-dropping to the Slicer application window. GE 3D ultrasound images can be also loaded using the DICOM module (then the files do not have to be renamed).

Example import of 4D ultrasound sequence and ECG imported from GE system:

![](Image3dApiExample.png)

Additional vendor-specific file reading options are described below.

## Philips

### Import Philips 4D cardiac images:

Philips machines save 3D/4D ultrasound data in private fields. Method to extract volumetric images from these fields is not publicly disclosed. However, Philips QLAB cardiac analysis software can export images to a DICOM format variant, which stores volumetric images in standard fields, which can be interpreted without proprietary methods. Unfortunately, these DICOM files are not fully DICOM compliant (required fields, such as SOP instance UID, patient name, ID, study instance UID, and series instance UID fields are missing), therefore they need to be fixed up before they can be imported into a DICOM database.

This file has been truncated. show original

The GE section is about half way down. I haven’t gotten a response from GE yet, fingers crossed.

MartinNA · June 16, 2023, 9:36pm

Hi
I have a similar problem, I have .vol files from a voluson S8 ultrasound, the doctor gave me the files via USB, when I pass them to slicer an error appears and that it cannot load them. I don’t know if anyone has had the same problem and how do I solve it.

Topic		Replies	Views
2D image of .dcm file to 3D Volume Support	9	2545	May 2, 2024
Baby 3D ultrasound printing Support	1	300	July 16, 2021
Segmenting GE Voluson ultrasound image Support segmentation , ultrasound	5	816	March 2, 2024
Problem loading VolDICOM Support ultrasound , heart , slicerheart	14	967	November 2, 2021
How to export volumetric files from GE ultrasound Support dicom , ultrasound	3	1124	December 6, 2018

Having Trouble Extracting Ultrasound DICOM/Vol file from GE Voluson S8

Related topics