I want to set the IJK to RAS direction matrix for all my scans I upload. The current matrix gives me a mirrored volume after segmentation. I believe the “IJK to RAS direction matrix” should be (1 0 0, 0 1 0, 0 0 1). How do I configure this matrix in my settings?
If you look through the script repository you can find examples of setting the IJKToRAS matrix. Also you’ll find examples of setting your slicerrc.py file to do things automatically when nodes are added to the scene.