I am trying to test the coverage in my extension. This is easily performed by pytest --cov-report term --cov=Dosimetry4D However this results in $ pytest --cov-report term --cov=Dosimetry4D Failed to import the site module Traceback (most recent call last): File "/usr/src/Slicer-build/python-in…

For me, attempt to start gdb fails with the same error. From the bug report you referenced, it is not clear for me if this is solved in Python 3.8, but I’m not an experienced Linux user. It would be great if you could investigate this further, for example try to build Slicer with Python 3.8 and see …

I tried using python 3.8.5, however the build fails at this point CMake Error at cmake/libpython/CMakeLists.txt:442 (add_executable): Cannot find source file: /usr/src/Slicer-build/Python-3.8.5/Parser/bitset.c Tried extensions .c .C .c++ .cc .cpp .cxx .cu .m .M .mm .h .hh .h++ .hm .hpp …

To support building Slicer against the CPython 3.7 or 3.8, we would need help to finalize this pull request Upgrade to Python 3.8.3 python-cmake-buildsystem:master ← dand-oss:upgrade-py383 opened 12:23PM - 14 May 20 UTC (…

The version with python 3.6.12 is running ok in ubuntu and docker. But the issue remains $ pytest --cov-report term --cov=Dosimetry4D Failed to import the site module Traceback (most recent call last): File "/usr/src/Slicer-build/python-install/lib/python3.6/site.py", line 553, in <module> ma…

Thanks for the update. Does gdb work for you with Slicer (for example, can you launch Slicer using gdb)?

[image] lassoan: Does gdb work for you with Slicer (for example, can you launch Slicer using gdb)? Unfortunately not, but the change from 3.6.7 to 3.6.12 is not supposed to add anything new, just bug corrections. I have detected if you run ccmake for Slicer build that you have a WITH_COVERAG…

Impossibility to test for coverage in extensions

Development

Alex_Vergara (Alex Vergara) September 2, 2020, 2:19pm 5

In the meanwhile, I am testing Slicer with python 3.6.12 and so far the build is ok, when I tested it I will propose a PR to upgrade to 3.6.12 which is harmless and less traumatic.

Topic		Replies	Views
Nightly build TESTS failing for extensions with dependencies to other scriptable modules Development	61	3211	February 16, 2018
'ColocZStats' extension install error on Windows Support extensions-manager , python , extensions	2	420	April 12, 2023
OpenDose 3D Extension Development extensions-manager	4	590	December 8, 2021
Test extension in Docker Support extensions-manager , docker , testing	14	1033	August 30, 2019
Errors while loading Slicer nightly Development bug , slicerrt , python	2	1058	April 19, 2019

Impossibility to test for coverage in extensions

Related topics