I am new to the slicer 3d and would like to map brain lesions (structural scans, T1, DWI, T2, dicom format) to visualize interactions with fibre tracts by coregistration with a standard connectome database/atlas (like HCP). As far as I understand, the workflow should be:
- Coregister individual MRI data with MNI-standard space
- Delineate lesions
- Coregister with the connectome tracts.
Is this possible? If yes- would someone mind helping me navigate through the steps?