I have a bunch of .tif files of the entire body of an organism. I want to measure the volume of an organ in the animal. What steps should I take?
- You need to import your tiff files into slicer. You can use the
ImageStacksin SlicerMorph to do that
- You can then use the
Segment Editorto segment the individual organs
- Then you can use the
Segment Statisticsmodule to calculate the volumes of individual organs.
If you are new to Slicer, you may want to review SlicerMorph tutorials, which explains these steps: