We would like to announce a new Slicer extension, MEMOS, for deep-learning based segmentation of diceCT scans of fetal mice. See the repository for quick installation instructions.
No, we don’t have anything for adult mice. We don’t really do physiology, mostly development.
However, it is getting easier to train deep learning networks for custom segmentation tasks. So if you have already manually segmented ones that can be used as training data, it might be just a matter of putting some GPUs to use.