this selector bar is gray. [image]

This is probably intentional. You can submit a feature request to GitHub - Project-MONAI/MONAILabel: MONAI Label is an intelligent open source image labeling and learning tool. to discuss this with the developers of the extension.

The MONAILabel extension accepts that you open a different volume in 3D Slicer, run inference (“Autosegmentation → Run”), optimize the labels via the integrated “Segment editor”, then “Submit Label” to the MONAILabel server.

for example, I am training the model ,I fond the accuracy is very good ,now I want to use a new volume to test the model ,then how to do? One way is to finish training all the data of datasets. I will continue clicking next sample until the last one. In fact ,the source volume means the current vo…

In my experience what you do is close the scene, load a new volume, and then it becomes the selected target for running the inference.

Yes ,right! But this is not convenient，and I can only load a volume into the scene, I want to load different volumes into the scene. for example, I have many volumes ,I want to label them one by one and submit the volume with label . I can chose different volumes in source volume bar. The button ne…

You probably will need to do some data preparation and bring the files exactly into the data file structure that MONAILabell uses, then connect MONAILabel server to your own dataset. Call your volumes by “Next sample”, label 4-5 volumes this way, “Submit label” each time, then train. Depending on …

@slicer365 Do you feel that the model works well already and so instead of training you just want to use it conveniently for segmenting your images? @pieper @rbumm What is the recommended method for deploying models trained by MONAILabel? Creating a MONAI bundle? Should we create a Segment Editor e…

I have some brain hemorrhage CT data, I want to segment the hematoma, then I used the pre-training model of spleen, I just use 4 sets of data to modify and submit the label, and then train it, the result is amazing, it performs very well.

The segment editor effect is an interesting idea! I am not aware of a public inference server, but maybe bundles are already part of the MONAI Model Zoo, @diazandr3s could you comment? Here is how inference can be made with a running MONAILabel Server, specifying a trained model (tested code): log…

MONAILabel module should allow user to select different volumes in current scene

Development

rbumm (Rudolf Bumm) March 23, 2023, 8:05am 3

This seems to be normal behavior, if you start your MONAILabel server and press “Next Sample” in the MONAILabel extension, the “Source Volume” will be automatically set, but remain greyed out.

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MONAILabel module should allow user to select different volumes in current scene

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