Operating system: Mac OS Slicer version: 4.11.0 Hi all, I am wondering if there is a functionality in 3d slicer where I can move the segmentation in terms of its location? I am basically creating cube segmentation of different cartridges in a phantom. I basically need the segmentations to be the …

[image] muratmaga: you can put it under transform and use translation sliders to move wherever you want. You can do all this in the Data module, by right-clicking on the transforms column: [interactive_transform] Transform is rotated by left-click-and-drag, and translated by Shift+left-clic…

After the cloning, you will have a separate node, and you can put it under transform and use translation sliders to move wherever you want. If your cartridges are of simple shapes (cube, sphere, cylinder etc) you can create models of exact dimension for each of them (SlicerIGT extension, CreateMode…

Thank you so much! this helps a lot! best Tenzin

[image] lassoan: Transform is rotated by left-click-and-drag, and translated by Shift+left-click-and-drag. Apart from rotate, translate and scale is there a way to enable “interaction handles” or move it in slice view (other than using the transform module). Idea is to restrict the translati…

This is still the stock VTK box widget, which is very limited. @Sunderlandkyl is working on adding a markups ROI widget and the next one will be the transform widget, probably in about 6 months. Until then, modules can use plane widgets to specify position and orientation interactively (keep copying…

Hi Andras, My slicer doesn’t have the interaction in 3D view selection, do you think its the version of the slicer that I am working in? best Tenzin

Yes, you need to use latest stable or preview version of Slicer.

Just wanted to add that this was incredibly helpful, thank you.

Dear Iassoan and other contributors to this discussion, Thank you for the very helpful posts! Can I ask for a clarification? When I used the method above, I could manually transpose and fit segmentation masks to my data. However, when I save the segmentation as Nifti and load it on different sof…

I don’t think ITK-snap can overlay segmentation if it has different geometry (origin, spacing, axis directions, or extents) than the main image. You can either use more capable software (such as Slicer) that does not have such limitation; or you can resample the segmentation to match the geometry o…

Thank you for your immediate and helpful reply! I use Slicer and would prefer the suggested file format, however my second step is to use ML feature extraction on images. The pipelines and software i used require NiFTi files and when i tried resampling the images were not accepted. I will try the s…

Moving segmentation

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Moving segmentation

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