Hi there, I am doing whitematteranalysis along with WMA tutorial: whitematteranalysis/subject-specific-tractography-parcellation.md at master · SlicerDMRI/whitematteranalysis · GitHub. In the last step of tutorial, " 8. Fiber tract diffusion measurements", I could not get any CSV file in the created new DiffusionMeasurements folder with error message of below:
brain@l4n:~/Desktop/WMA_tutorial_data$ wm_diffusion_measurements.py ./FiberClustering/SeparatedClusters/tracts_commissural/ ./DiffusionMeasurements/commissural_clusters.csv /home/brain/Downloads/Slicer-5.2.2-linux-amd64/NA-MIC/Extensions-31382/SlicerDMRI/lib/Slicer-5.2/cli-modules/FiberTractMeasurements
Importing whitematteranalysis package.
<wm_diffusion_measurements>. Starting scalar measurement extraction.=====input directory======
./FiberClustering/SeparatedClusters/tracts_commissural/
=====output directory=====
./DiffusionMeasurements
=====3D Slicer====
/home/brain/Downloads/Slicer-5.2.2-linux-amd64/NA-MIC/Extensions-31382/SlicerDMRI/lib/Slicer-5.2/cli-modules/FiberTractMeasurements/home/brain/Downloads/Slicer-5.2.2-linux-amd64/NA-MIC/Extensions-31382/SlicerDMRI/lib/Slicer-5.2/cli-modules/FiberTractMeasurements: error while loading shared libraries: libSlicerBaseLogic.so: cannot open shared object file: No such file or directory
<wm_diffusion_measurements> Measurements done at: ./DiffusionMeasurements/commissural_clusters.csv
This is happened to both tutorial data and my own DTI data, and either input is SeparatedClusters or AnatomicalTracts. I think the folder structure for SlicerDMRI in my PC is correct.
Anyone who has advice on this issue?
Thank you,
Fumi