Hello
Dear Slicer Developers
I want to use Slicer-4.9.0-2018-01-10-linux-amd64 in Fedora core 25 with the following specifications:
[sn@localhost ~]$ uname --all
Linux localhost.localdomain 4.8.6-300.fc25.x86_64 #1 SMP Tue Nov 1 12:36:38 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
[sn@localhost ~]$
When I run Slicer, I get the following messages. Anyway, Slicer is run but “Suject Hierarchy” is not seen.
[sn@localhost ~]$ Slicer
Number of registered modules: 182
Enabling C extensions
ModuleDescriptionParser Error: <index> cannot be specified because a <longflag> and/or <flag> has been specified for this parameter." at line 19 while parsing <?xml version="1.0" encoding="utf-8"?>
`<executable>`
<category>Testing</category>
<title>Eval Shape</title>
<description><![CDATA[Evaluate shape group index with neural network.]]></description>
<version>1.0.$Revision$</version>
<documentation-url></documentation-url>
<license>slicer4</license>
<contributor>Priscille de Dumast (University of Michigan)</contributor>
<acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
<parameters>
<label>IO</label>
<description><![CDATA[Input/output parameters]]></description>
<file fileExtensions=".zip">
<name>inputZip</name>
<label>Input Zip</label>
<longflag>--inputZip</longflag>
<channel>input</channel>
<index>0</index>
<description><![CDATA[Input zip]]></description>
</file>
<file fileExtensions=".zip">
<name>outputZip</name>
<label>Output Zip</label>
<longflag>--outputZip</longflag>
<channel>output</channel>
<index>1</index>
<description><![CDATA[Output zip]]></description>
</file>
</parameters>
</executable>
Failed to parse xml module description:
"<?xml version="1.0" encoding="utf-8"?>
<executable>
<category>Testing</category>
<title>Eval Shape</title>
<description><![CDATA[Evaluate shape group index with neural network.]]></description>
<version>1.0.$Revision$</version>
<documentation-url></documentation-url>
<license>slicer4</license>
<contributor>Priscille de Dumast (University of Michigan)</contributor>
<acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
<parameters>
<label>IO</label>
<description><![CDATA[Input/output parameters]]></description>
<file fileExtensions=".zip">
<name>inputZip</name>
<label>Input Zip</label>
<longflag>--inputZip</longflag>
<channel>input</channel>
<index>0</index>
<description><![CDATA[Input zip]]></description>
</file>
<file fileExtensions=".zip">
<name>outputZip</name>
<label>Output Zip</label>
<longflag>--outputZip</longflag>
<channel>output</channel>
<index>1</index>
<description><![CDATA[Output zip]]></description>
</file>
</parameters>
</executable>"
ModuleDescriptionParser Error: <index> cannot be specified because a <longflag> and/or <flag> has been specified for this parameter." at line 19 while parsing <?xml version="1.0" encoding="utf-8"?>
<executable>
<category>Testing</category>
<title>Train Neural Network</title>
<description><![CDATA[Train a neural network.]]></description>
<version>1.0.$Revision$</version>
<documentation-url></documentation-url>
<license>slicer4</license>
<contributor>Priscille de Dumast (University of Michigan)</contributor>
<acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
<parameters>
<label>IO</label>
<description><![CDATA[Input/output parameters]]></description>
<file fileExtensions=".zip">
<name>inputZip</name>
<label>Input Zip</label>
<longflag>--inputZip</longflag>
<channel>input</channel>
<index>0</index>
<description><![CDATA[Input zip file]]></description>
</file>
<file fileExtensions=".zip">
<name>outputZip</name>
<label>Output Zip</label>
<longflag>--outputZip</longflag>
<channel>output</channel>
<index>1</index>
<description><![CDATA[Output zip]]></description>
</file>
</parameters>
</executable>
Failed to parse xml module description:
"<?xml version="1.0" encoding="utf-8"?>
<executable>
<category>Testing</category>
<title>Train Neural Network</title>
<description><![CDATA[Train a neural network.]]></description>
<version>1.0.$Revision$</version>
<documentation-url></documentation-url>
<license>slicer4</license>
<contributor>Priscille de Dumast (University of Michigan)</contributor>
<acknowledgements><![CDATA[This work was supported by the National Institutes of Dental and Craniofacial Research and Biomedical Imaging and Bioengineering of the National Institutes of Health under Award Number R01DE024450.]]></acknowledgements>
<parameters>
<label>IO</label>
<description><![CDATA[Input/output parameters]]></description>
<file fileExtensions=".zip">
<name>inputZip</name>
<label>Input Zip</label>
<longflag>--inputZip</longflag>
<channel>input</channel>
<index>0</index>
<description><![CDATA[Input zip file]]></description>
</file>
<file fileExtensions=".zip">
<name>outputZip</name>
<label>Output Zip</label>
<longflag>--outputZip</longflag>
<channel>output</channel>
<index>1</index>
<description><![CDATA[Output zip]]></description>
</file>
</parameters>
</executable>"
Number of instantiated modules: 182
When loading module "ProstateMRIUSContourPropagation" , the dependency "DicomRtImportExport" failed to be loaded.
Number of loaded modules: 181
Switch to module: "Welcome"
Loaded volume from file: /home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group04.nii. Dimensions: 30x13x28. Number of components: 1. Pixel type: unsigned short.
"Volume" Reader has successfully read the file "/home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group04.nii" "[0.15s]"
Loaded volume from file: /home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group05.nii. Dimensions: 31x15x17. Number of components: 1. Pixel type: unsigned short.
"Volume" Reader has successfully read the file "/home/sn/samanehjan/workspaceSPHARM/input/sample1_C1_group05.nii" "[0.03s]"
Switch to module: "Data"
Switch to module: "Segmentations"
Switch to module: ""
Switch to module: ""
[sn@localhost ~]$
Please guide me.
Thanks a lot.
Shahrokh