Problems exporting segmentation as separate Z slices

[Davide_Cester]

Just for completeness, this is the procedure that does not work for me:

Convert image and segmentation to DICOM

Andras, I am now trying to convert nrrd files to DICOM. The main image is converting just fine, but I am not able to figure out how to convert just the contour, as it does not show up when using “Create a DICOM series.” How can I also convert this file?

The “Create DICOM Series” seems to work and maybe is also be suitable for automation…

Create a DICOM Series for batch of images

I am able to convert a nrrd file to a DICOM series manually using the Create a DICOM Series module, however, I can’t find a way to conduct this process automatically and I have 200 image sets that each need to be converted. Is there any way to do this DICOM creation in batch? Thanks!