In the local threshold code on GitHub, there is a function updateMRMLfromGUI: def updateMRMLFromGUI(self): SegmentEditorThresholdEffect.updateMRMLFromGUI(self) minimumDiameterMm = self.minimumDiameterSpinBox.value self.scriptedEffect.setParameter(MINIMUM_DIAMETER_MM_PARAMETER_NAME, minimumDiamete…

Hello Andras! We are in the testing stage of the entire code now. To confirm, we are running it line by line in the python interactor. The GitHub code uses an apply function(which appears to be synonymous with run the algorithm). The parameters for apply are self and ijkPoints. Whenever we run the…

You need to call apply like this: effect.apply(ijkPoints)

It says effect is not defined when I attempted this…

You need to set an active effect first.

Call setActiveEffectByName, as it is done in all the examples .

We set an active effect by name, but once again receive another error. It says: Attribute Error: qSlicerSegmentEditorScriptEffect has no attribute named ‘apply’ This was after running effect.apply(ijkPoints) We defined the function apply, what should we do?

Indeed, in case of this effect, which is derived from C++ effect, the syntax is slightly different, as effect refers to the C++ effect, and you need to call effect.self() to access the methods added in Python. So, a complete example: segmentEditorWidget = slicer.modules.segmenteditor.widgetReprese…

@lassoan I am sorry to bother you again. I copied all of the functions from the Local Threshold into the Python Interactor and created a segmentationNode around a pre-determined point. Then, I run this code: segmentEditorWidget = slicer.modules.segmenteditor.widgetRepresentation().self().editor s…

You can only select an effect if you selected a master volume and created a segment. See the examples . Also note that the order of operations need to be fixed (effect = comes first) and that world coordinate is physical (RAS) coordinate and not IJK. You need to convert to RAS to IJK before inserti…

Python - Editing Feature Size Local Threshold - #17 by lassoan - Development

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