Hello, I’ve been using total segmentator in Slicer 5.2.2 for quite sometime. Because of hardware issues, I detete slicer. When I reinstall slicer 5.2.2 and try to run total segmentator,I receive the message “PyTorch 1.8.1 + cpu is not compatible with this module…”. Previously, I’ve been running total segmentator tool with CPU (which is Intel iris Xe graphics) as I do not have dedicated GPU. I need help to fix this problem. Thank you.
You can use the SlicerPyTorch extension and see if you can configure it to install the correct version.
Or you can generate a pytorch install command from here: Start Locally | PyTorch
For example setting it to use CPU the pip install command it gives is
pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu
so you can achieve this in your slicer python environment by opening the slicer python console and doing the following:
slicer.util.pip_install("torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cpu")
Consider first doing
slicer.util.pip_uninstall("torch")
to remove the old version – idk if it does that automatically
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CPU version of PyTorch is fine, you just need more recent PyTorch version than 1.8.1 for current TotalSegmentator version.
Your screenshot and error message says you are using Slicer 5.2.1. Please try with 5.2.2 (latest stable) and report back.
I used slicer5.3，uninstall pytorch, reinstall pytorch as the error message said set version >=1.12
