Hello I am trying to use the SAMM module in 3-D slicer. I was unable to import it using the extensions manager and I saw that I can use this command to use any outside extension: Slicer.exe --additional-module-paths D:\Downloads\samm-main\samm-main\samm
When I run that command on cmd I get this:
'Slicer.exe' is not recognized as an internal or external command,
operable program or batch file.
What should I do? Is there a different method I should import modules?
You need to go the folder where Slicer.exe is. For example, using this command:
cd %LOCALAPPDATA%\slicer.org\Slicer 5.4.0
Thank you that worked! But now I have a new problem:
After running this command:
Slicer.exe --additional-module-paths D:\Downloads\samm-main\samm-main\samm
Slicer opens, but the module doesn’t show up in 3-d slicer:
The SAMM folder looks like this:
Does anyone know what’s wrong? There were no errors in the console.
Try the paths with / instead of \
I used Slicer.exe --additional-module-paths D:/Downloads/samm-main/samm-main. But this still didn’t work.
What does this mean? :
I think you are missing the final /samm folder in your path.
like this:
Also instructions says you need to use extension wizard, did you try that? That might generate an error for you to understand why it is failing.
Thank You that worked!
I made some data of a segmented brain. What’s the best way to use this data and train using SAMM?
Not sure if anyone here has any experience using SAMM to train a segmentation model. If you have already created some labeled data, you can give MonaiLabel a try though…
https://docs.monai.io/projects/label/en/latest/quickstart.html
I am trying to compare MONAILABEL and SAMM.
I might be wrong, but I believe SAMM Slicer extension only allows you to use the SAM tool for segmentation. I am not sure if it actually offers any retraining functionality.
You might have better luck contacting the extension developers, I am not sure if they are tracking this forum.
Ok, thank you. I will ask in the github.
