Dear 3D Slicer Community
I tried searching through previous topics, but did not find an answer to my problem.
I had a few images I needed to manually rotate so they have approximately the same orientation. For this I first centered the volume of the image, created a Lineartransform, moved the image file under the lineartransform whereby I hardened the centered volume transform. I then manually transformed the image to how I wanted it to be. When done, I hardened the image and saved both the scene, the lineartransform, the center transform and the now transformed image (nii.gz).
However, afterwards if I open only the transformed image in a new slicer window, the transformation seems to have been improperly saved and has slightly rotated… If I open the scene in another slicer window, the image looks fine.
I drew a little schematic example of what I mean.
How to solve this, and make sure that my transformed image gets saved properly?
Thank you for the help!