Segmentation from reference segment

Development
1

Hello,
I’m looking to automate a somewhat complex manual segmentation and trimming process. I would like to explore all the available options for this. Specifically, I’m wondering if Slicer has a feature to segment based on a reference segment that has already been manually segmented.

Initially, I want to do this through the UI, but Eventually, I would like to implement the process through a Python script.

Could you provide more insight into how this could be achieved?

2

It is impossible to tell anything really useful without knowing anything about the structures you want to segment. With this much information all I can think of are 1) training a DL model for your needs or 2) Creating a generic initial seeding for Grow from seeds, adapting it to the current image and run GrowCut.

If you want better advice, I suggest providing more details.