Segmentation has changed images resolution

Support
1

Operating system: Windows 8.1
Slicer version: 4.11.20210226
Expected behavior: Use the same resolution as volume images
Actual behavior: The segmentation has higher image resolution compared to native T1 volume

Original volume parameters
Original volume parameters559×586 48.3 KB

Segmentation parameters
Segmentation parameters567×643 48 KB

Hi,

I have been segmenting brain lesions on T1 images for a while. After coregistering T1 to DTI images I hoped to use these segmentations to analyse DTI parameters (FA, MD etc.) within the segmentation.
As suggested, I exported the segmentations as lablemaps. However, image resolution has changed. Slice thickness has been reduced from 1 mm (native volume) to 0.7 mm (segmentation) and z axis slices have been increased from a total of 168 (native volume) to 240 (segmentation).

Sadly, this unable me to overlay the segmentation to the coregistered images and derive DTI parameters.

I have managed to modify the slice thickness, but I cannot change the number of slices in the z axis.

Could you please help me?

All the best

Antonio

2

You can use many volumes throughout the segmentation process, each may have different geometry (origin, spacing, axis directions and extents). The segmentation is set to the geometry of the first volume that you select as master volume, but you can change this anytime. You can also choose any volume as reference volume when you export the segmentation to file (segmentation will be resampled to match the geometry of the reference volume).

What software do you use that cannot overlay two volumes that are in the same physical space just happen to have different geometries?