sitk error. Input for "LabelStatisticsImageFilter" does not match the primary input's size

Community Radiomics
1

Hello dear members,

I’ve been working with pyradiomics to try to analyse a segment of pericardial fat. I will replicate the code bellow. Unfortunatly I cannot attach the files here as the upload option does not allow for nrrd files to be uploaded.

import os
import SimpleITK
import six
from radiomics import featureextractor

imageName =  '/home/my_name/Desktop/image.nrrd'
maskName = '/home/my_name/Desktop/mask.nrrd'

params = '/home/my_name/pyradiomics/examples/exampleSettings/Params.yaml'

extractor = featureextractor.RadiomicsFeatureExtractor(params)

result = extractor.execute(imageName, maskName)
for key, val in six.iteritems(result):
  print("\t%s: %s" %(key, val))

Once I run the code I get the following error message (see attached image)

Untitled
Untitled1604×664 128 KB

Has anyone encountered this problem before? Thank you,

2

It seems that pyradiomics requires the segmentation mask’s geometry (origin, spacing, axis directions, and extents) to match the analyzed volume’s geometry.