Slicer fresh build crash start, but executes with sudo permissions

acsenrafilho · November 23, 2023, 12:26pm

Hi Slicers!

I am quite embarrassed to ask this, but I have tried to find this topic on the forum and rebuilding Slicer several times with slightly different options. However, it still continues to happen.

The problem is that the Slicer build from the source (Linux system) crashes when starts, but when I call the execution using sudo permission ("sudo ./Slicer) it works normally. I followed the build instructions on the Slicer documentation

I copied the terminal output to present my system and Slicer configuration details. The command called was: ./Slicer --launcher-verbose --application-information

Terminal output

antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build$ ./Slicer --launcher-verbose --application-information 
info: AdditionalSettingsFilePath []
info: LauncherSplashImagePath [/home/antonio/Documents/Slicer/Applications/SlicerApp/Resources/Images/Slicer-SplashScreen.png]
info: LauncherSplashScreenHideDelayMs [3000]
info: ApplicationToLaunch [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/./SlicerApp-real]
info: ApplicationToLaunchArguments []
info: AdditionalSettingsFilePath []
info: LauncherDir [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build]
info: LauncherName [Slicer]
info: OrganizationDomain [slicer.org]
info: OrganizationName [slicer.org]
info: ApplicationName [Slicer]
info: ApplicationRevision [31938]
info: SettingsFileName [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/./SlicerLauncherSettings.ini]
info: SettingsDir [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build]
info: UserAdditionalSettingsDir [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org]
info: UserAdditionalSettingsFileName [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini]
info: UserAdditionalSettingsFileBaseName []
info: AdditionalSettingsDir []
info: AdditionalSettingsExcludeGroups []
info: LauncherNoSplashScreen [0]
info: AdditionalLauncherHelpShortArgument [-h]
info: AdditionalLauncherHelpLongArgument [--help]
info: AdditionalLauncherNoSplashArguments [--no-splash,--help,--version,--home,--program-path,--no-main-window,--settings-path,--temporary-path]
info: DetachApplicationToLaunch [0]
info: LoadEnvironment [-1]
info: LauncherSplashImagePath [/home/antonio/Documents/Slicer/Applications/SlicerApp/Resources/Images/Slicer-SplashScreen.png]
info: LauncherSplashScreenHideDelayMs [3000]
info: ApplicationToLaunch [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/./SlicerApp-real]
info: ApplicationToLaunchArguments []
info: <APPLAUNCHER_DIR> -> [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build]
info: <APPLAUNCHER_NAME> -> [Slicer]
info: <APPLAUNCHER_SETTINGS_DIR> (RegularSettings) -> [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build]
info: <APPLAUNCHER_SETTINGS_DIR> (UserAdditionalSettings) -> [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org]
info: <APPLAUNCHER_SETTINGS_DIR> (AdditionalSettings) -> [<APPLAUNCHER_SETTINGS_DIR-NOTFOUND>]
info: <PATHSEP> -> [:]
info: Setting env. variable [QTWEBENGINE_DISABLE_SANDBOX]:1
info: Setting env. variable [SLICER_HOME]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build
info: Setting env. variable [PIP_REQUIRE_VIRTUALENV]:0
info: Setting env. variable [ITK_AUTOLOAD_PATH]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/ITKFactories/.
info: Setting env. variable [PYTHONNOUSERSITE]:1
info: Setting env. variable [PYTHONHOME]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install
info: Setting env. variable [SSL_CERT_FILE]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/share/Slicer-5.4/Slicer.crt
info: Setting env. variable [LibraryPaths]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/cli-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/OpenSSL:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/VTK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/teem-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/DCMTK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/ITK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/CTK-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/QtTesting-build/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/PythonQt-build/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/LibArchive-install/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/SimpleITK-build/SimpleITK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/SlicerExecutionModel-build/ModuleDescriptionParser/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/site-packages/numpy/core:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/site-packages/numpy/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/JsonCpp-build/src/lib_json/.
info: Setting env. variable [LD_LIBRARY_PATH]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/cli-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/OpenSSL:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/VTK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/teem-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/DCMTK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/ITK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/CTK-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/QtTesting-build/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/PythonQt-build/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/LibArchive-install/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/SimpleITK-build/SimpleITK-build/lib/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/SlicerExecutionModel-build/ModuleDescriptionParser/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/site-packages/numpy/core:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/site-packages/numpy/lib:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/JsonCpp-build/src/lib_json/.
info: Setting env. variable [PATH]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/cli-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/bin:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/teem-build/bin/.
info: Setting env. variable [QT_PLUGIN_PATH]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/CTK-build/bin:/usr/lib/plugins
info: Setting env. variable [PYTHONPATH]:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/.:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/lib-dynload:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/site-packages:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/VTK-build/lib/python3.9/site-packages:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/CTK-build/bin/Python:/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/CTK-build/CTK-build/bin/.
info: Starting [/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/./SlicerApp-real]
info: argument [--application-information]
info: launcher-timeout (ms) [-1000]
info: DisableSplash [0]
Session start time .......: 2023-11-23 09:00:21
Slicer version ...........: 5.4.0-2023-08-19 (revision 31938 / 311cb26) linux-amd64 - not installed release
Operating system .........: Linux / 5.15.0-88-generic / #98-Ubuntu SMP Mon Oct 2 15:18:56 UTC 2023 / UTF-8 - 64-bit
Memory ...................: 15778 MB physical, 2047 MB virtual
CPU ......................: GenuineIntel 12th Gen Intel(R) Core(TM) i7-12700H, 14 cores, 20 logical processors
VTK configuration ........: OpenGL2 rendering, Sequential threading
Qt configuration .........: version 5.15.3, with SSL, requested OpenGL 3.2 (core profile)
Internationalization .....: disabled, language=
Developer mode ...........: disabled
Application path .........: /home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin
Additional module paths ..: (none)

antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build$ cmake --version
cmake version 3.27.8

CMake suite maintained and supported by Kitware (kitware.com/cmake).

I am sorry for the newbie problem, probably I missed something simple in the middle of the configuration.
Any help would be very nice.

lassoan · November 23, 2023, 12:43pm

The crash is probably in SlicerApp-real due to trying to access some resources (temporary folder?).

Can you get a stack trace of the crash? That would tell what is the resource that the application cannot access and we could make the error detection and reporting more robust and helpful.

acsenrafilho · November 23, 2023, 8:08pm

Hi lassoan,

Can you help me to set up this stack trace execution? I did know how to do it.

I am trying to get more information about it, but any instruction will be very helpful.

acsenrafilho · November 23, 2023, 8:17pm

lassoan,

I get a tip on another post in the Slicer forum (link) and I copied the final part of the execution:

access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = -1 EACCES (Permission denied)
access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = -1 EACCES (Permission denied)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3ce0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c80) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3ce0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c80) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3ce0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c80) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3ce0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c80) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3ce0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c80) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3cc0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c60) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3cc0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c60) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3cc0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c60) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3cc0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c60) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3cc0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c40) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3be0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c40) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3be0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c40) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3be0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c40) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3be0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c40) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3be0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c10) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3bb0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c10) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3bb0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c10) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3bb0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c10) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3bb0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3c10) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3bb0) = -1 ENOENT (No such file or directory)
access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = -1 EACCES (Permission denied)
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/code.py", {st_mode=S_IFREG|0644, st_size=10622, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/code.py", {st_mode=S_IFREG|0644, st_size=10622, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/code.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=9978, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d2e90)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=9978, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a~)\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 9979) = 9978
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/codeop.py", {st_mode=S_IFREG|0644, st_size=6326, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/codeop.py", {st_mode=S_IFREG|0644, st_size=6326, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/codeop.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=6520, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d2020)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=6520, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\266\30\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 6521) = 6520
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pydoc.py", {st_mode=S_IFREG|0644, st_size=109545, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pydoc.py", {st_mode=S_IFREG|0644, st_size=109545, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/pydoc.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=85378, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d2df0)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=85378, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\351\253\1\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 85379) = 85378
read(26, "", 1)                         = 0
close(26)                               = 0
mmap(NULL, 262144, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7f4ed9388000
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pkgutil.py", {st_mode=S_IFREG|0644, st_size=24276, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pkgutil.py", {st_mode=S_IFREG|0644, st_size=24276, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/pkgutil.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=18628, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d1f80)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=18628, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\324^\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 18629) = 18628
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/sysconfig.py", {st_mode=S_IFREG|0644, st_size=24914, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/sysconfig.py", {st_mode=S_IFREG|0644, st_size=24914, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/sysconfig.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16129, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d1f80)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16129, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340aRa\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16130) = 16129
read(26, "", 1)                         = 0
close(26)                               = 0
getcwd("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build", 1024) = 67
newfstatat(AT_FDCWD, "/home", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio", {st_mode=S_IFDIR|0750, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/Modules/Setup", 0x7ffc0c5d19c0, 0) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/Modules/Setup.local", 0x7ffc0c5d19c0, 0) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/_sysconfigdata__linux2_.py", {st_mode=S_IFREG|0644, st_size=18320, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/_sysconfigdata__linux2_.py", {st_mode=S_IFREG|0644, st_size=18320, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/_sysconfigdata__linux2_.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16219, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffc0c5d1050)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16219, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\307\20]e\220G\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16220) = 16219
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio", {st_mode=S_IFDIR|0750, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/config-3.9", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
pipe2([26, 27], 0)                      = 0
lseek(1, 0, SEEK_CUR)                   = 0
dup(1)                                  = 28
dup2(27, 1)                             = 1
close(27)                               = 0
mmap(NULL, 8392704, PROT_NONE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_STACK, -1, 0) = 0x7f4ed8b87000
mprotect(0x7f4ed8b88000, 8388608, PROT_READ|PROT_WRITE) = 0
rt_sigprocmask(SIG_BLOCK, ~[], [], 8)   = 0
clone3({flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID, child_tid=0x7f4ed9387910, parent_tid=0x7f4ed9387910, exit_signal=0, stack=0x7f4ed8b87000, stack_size=0x7fd1c0, tls=0x7f4ed9387640} => {parent_tid=[1063867]}, 88) = 1063867
rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
pipe2([27, 29], 0)                      = 0
lseek(2, 0, SEEK_CUR)                   = -1 ESPIPE (Illegal seek)
dup(2)                                  = 30
dup2(29, 2)                             = 2
close(29)                               = 0
mmap(NULL, 8392704, PROT_NONE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_STACK, -1, 0) = 0x7f4ed8386000
mprotect(0x7f4ed8387000, 8388608, PROT_READ|PROT_WRITE) = 0
rt_sigprocmask(SIG_BLOCK, ~[], [], 8)   = 0
clone3({flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID, child_tid=0x7f4ed8b86910, parent_tid=0x7f4ed8b86910, exit_signal=0, stack=0x7f4ed8386000, stack_size=0x7fd1c0, tls=0x7f4ed8b86640} => {parent_tid=[1063868]}, 88) = 1063868
rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
futex(0x560153f6a738, FUTEX_WAKE_PRIVATE, 1) = 1
readlink("/tmp", 0x7ffc0c5d37e0, 1023)  = -1 EINVAL (Invalid argument)
statx(AT_FDCWD, "/tmp/Slicer-antonio", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFDIR|0775, stx_size=4096, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
unlink("/tmp/Slicer-antonio/Slicer_31938_20231123_090021_359.log") = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/CMakeCache.txt", F_OK) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
openat(AT_FDCWD, "/proc/cpuinfo", O_RDONLY) = 32
newfstatat(32, "", {st_mode=S_IFREG|0444, st_size=0, ...}, AT_EMPTY_PATH) = 0
read(32, "processor\t: 0\nvendor_id\t: Genuin"..., 1024) = 1024
read(32, "ock_detect avx_vnni dtherm ida a"..., 1024) = 1024
read(32, "cx8 apic sep mtrr pge mca cmov p"..., 1024) = 1024
read(32, "apic_reg vid ple shadow_vmcs ept"..., 1024) = 1024
read(32, "c rdrand lahf_lm abm 3dnowprefet"..., 1024) = 1024
read(32, "i7-12700H\nstepping\t: 3\nmicrocode"..., 1024) = 1024
read(32, "e waitpkg gfni vaes vpclmulqdq r"..., 1024) = 1024
read(32, "gb rdtscp lm constant_tsc art ar"..., 1024) = 1024
read(32, " spec_store_bypass swapgs eibrs_"..., 1024) = 1024
read(32, "lexpriority ept vpid ept_ad fsgs"..., 1024) = 1024
read(32, "ings\t: 20\ncore id\t\t: 12\ncpu core"..., 1024) = 1024
read(32, "ch_capabilities\nvmx flags\t: vnmi"..., 1024) = 1024
read(32, "mperf tsc_known_freq pni pclmulq"..., 1024) = 1024
read(32, "ress sizes\t: 39 bits physical, 4"..., 1024) = 1024
read(32, "lflushopt clwb intel_pt sha_ni x"..., 1024) = 1024
read(32, " yes\ncpuid level\t: 32\nwp\t\t: yes\n"..., 1024) = 1024
read(32, "expriority apicv tsc_offset vtpr"..., 1024) = 1024
read(32, " pdcm sse4_1 sse4_2 x2apic movbe"..., 1024) = 1024
read(32, "ineIntel\ncpu family\t: 6\nmodel\t\t:"..., 1024) = 1024
read(32, "ida arat pln pts hwp hwp_notify "..., 1024) = 1024
read(32, "ca cmov pat pse36 clflush dts ac"..., 1024) = 1024
read(32, "_vmcs ept_mode_based_exec tsc_sc"..., 1024) = 1024
read(32, "m 3dnowprefetch cpuid_fault epb "..., 1024) = 1024
read(32, "\t: 3\nmicrocode\t: 0x430\ncpu MHz\t\t"..., 1024) = 1024
read(32, "vaes vpclmulqdq rdpid movdiri mo"..., 1024) = 1024
read(32, "constant_tsc art arch_perfmon pe"..., 1024) = 1024
read(32, "ypass swapgs eibrs_pbrsb\nbogomip"..., 1024) = 1024
read(32, " ept vpid ept_ad fsgsbase tsc_ad"..., 1024) = 1024
read(32, "core id\t\t: 29\ncpu cores\t: 14\napi"..., 1024) = 1024
read(32, "ities\nvmx flags\t: vnmi preemptio"..., 1024) = 1024
read(32, "_known_freq pni pclmulqdq dtes64"..., 1024) = 1024
read(32, "s\t: 39 bits physical, 48 bits vi"..., 1024) = 1024
read(32, "t clwb intel_pt sha_ni xsaveopt "..., 1024) = 708
read(32, "", 1024)                      = 0
close(32)                               = 0
brk(0x560154484000)                     = 0x560154484000
brk(0x5601544ad000)                     = 0x5601544ad000
brk(0x5601544d5000)                     = 0x5601544d5000
brk(0x5601544f6000)                     = 0x5601544f6000
brk(0x560154517000)                     = 0x560154517000
brk(0x560154538000)                     = 0x560154538000
brk(0x560154560000)                     = 0x560154560000
brk(0x560154581000)                     = 0x560154581000
brk(0x5601545a2000)                     = 0x5601545a2000
brk(0x5601545c3000)                     = 0x5601545c3000
brk(0x5601545eb000)                     = 0x5601545eb000
brk(0x56015460c000)                     = 0x56015460c000
brk(0x56015462d000)                     = 0x56015462d000
brk(0x56015464e000)                     = 0x56015464e000
brk(0x560154676000)                     = 0x560154676000
brk(0x560154697000)                     = 0x560154697000
brk(0x5601546b8000)                     = 0x5601546b8000
brk(0x5601546d9000)                     = 0x5601546d9000
brk(0x560154701000)                     = 0x560154701000
brk(0x560154722000)                     = 0x560154722000
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
openat(AT_FDCWD, "/proc/meminfo", O_RDONLY) = 32
newfstatat(32, "", {st_mode=S_IFREG|0444, st_size=0, ...}, AT_EMPTY_PATH) = 0
read(32, "MemTotal:       16156924 kB\nMemF"..., 1024) = 1024
read(32, "pted:     0 kB\nAnonHugePages:   "..., 1024) = 395
read(32, "", 1024)                      = 0
close(32)                               = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = 32
close(32)                               = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini.lock", O_RDWR|O_CREAT|O_EXCL|O_CLOEXEC, 0666) = 32
flock(32, LOCK_EX|LOCK_NB)              = 0
openat(AT_FDCWD, "/proc/sys/kernel/random/boot_id", O_RDONLY|O_CLOEXEC) = 33
read(33, "738c301f-54a0-4d05-bc07-07f88f34"..., 36) = 36
close(33)                               = 0
openat(AT_FDCWD, "/var/lib/dbus/machine-id", O_RDONLY|O_CLOEXEC) = 33
read(33, "10b971ac1a304176906b1f6a23827476", 32) = 32
close(33)                               = 0
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
getpid()                                = 1063841
readlink("/proc/1063841/exe", "/home/antonio/Documents/Slicer-S"..., 256) = 85
getpid()                                = 1063841
write(32, "1063841\nSlicerApp-real\nLOAMRI-Le"..., 107) = 107
fdatasync(32)                           = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", W_OK) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT|AT_SYMLINK_NOFOLLOW, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org", O_RDWR|O_CLOEXEC|O_TMPFILE, 0600) = 33
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", R_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", W_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", X_OK) = -1 EACCES (Permission denied)
fchmod(33, 0664)                        = 0
statx(33, "", AT_STATX_SYNC_AS_STAT|AT_EMPTY_PATH, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=0, ...}) = 0
write(33, "[General]\nDatabaseDirectory_0.7."..., 16157) = 16157
write(33, "RecentFiles\\8\\file=@Variant(\\0\\0"..., 4380) = 4380
lseek(33, 0, SEEK_SET)                  = 0
fdatasync(33)                           = 0
linkat(AT_FDCWD, "/proc/self/fd/33", AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_SYMLINK_FOLLOW) = -1 EEXIST (File exists)
linkat(AT_FDCWD, "/proc/self/fd/33", AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini.hShYsc", AT_SYMLINK_FOLLOW) = 0
close(33)                               = 0
rename("/home/antonio/.config/slicer.org/Slicer.ini.hShYsc", "/home/antonio/.config/slicer.org/Slicer.ini") = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=20537, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
close(32)                               = 0
unlink("/home/antonio/.config/slicer.org/Slicer.ini.lock") = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e00) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e00) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e00) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e00) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e60) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffc0c5d3e00) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = -1 EACCES (Permission denied)
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
--- SIGSEGV {si_signo=SIGSEGV, si_code=SEGV_MAPERR, si_addr=0x7f4f6ecad6b8} ---
+++ killed by SIGSEGV (core dumped) +++
Segmentation fault (core dumped)

I hope this could help. Please let me know if there is another way to find the problem.

Thank you!

lassoan · November 23, 2023, 8:35pm

It is odd that Slicer cannot access this file: /home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini

Does the file exist?
Can the current user access it?
Does it help if you change permissions so that the current user can access it (or erase the file so that the current user creates it when launching Slicer)?

acsenrafilho · November 23, 2023, 8:47pm

Interesting… the file indeed exist, with the following info:

[Extensions]
FrontendServerUrl=https://extensions.slicer.org
InstallPath=slicer.org/Extensions-31938
LastServerAPI=Girder_v1
ManagerEnabled=true
ServerUrl=https://slicer-packages.kitware.com

[Modules]
AdditionalPaths=@Invalid()
IgnoreModules=@Invalid()

However, I do not know how this specific file is placed to root access

antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org$ ls -la
total 16
drwxrwxr-x  3 antonio antonio 4096 Nov 23 08:59 .
drwxrwxr-x 19 antonio antonio 4096 Nov 23 17:13 ..
drwxrwxr-x  2 antonio antonio 4096 Nov 21 18:02 Extensions-31938
-rw-rw-r--  1 root    root     254 Nov 23 08:59 Slicer-31938.ini

I have changed the file access to my user (antonio, using the command sudo chown antonio:antonio Slicer-31938.ini). However the execution still fails…

The new trace is:

rename("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini.euTTKB", "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini") = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
close(26)                               = 0
unlink("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini.lock") = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Extensions-31938", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFDIR|0775, stx_size=4096, ...}) = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5650) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55f0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5650) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55f0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5650) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55f0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5650) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55f0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5650) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55f0) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Extensions-31938", O_RDONLY|O_NONBLOCK|O_CLOEXEC|O_DIRECTORY) = 26
newfstatat(26, "", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_EMPTY_PATH) = 0
getdents64(26, 0x55ff1ce847a0 /* 2 entries */, 32768) = 48
getdents64(26, 0x55ff1ce847a0 /* 0 entries */, 32768) = 0
close(26)                               = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5660) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5600) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5660) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5600) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5660) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5600) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5660) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5600) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5660) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5600) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5640) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55e0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5640) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55e0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5640) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55e0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5640) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55e0) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5640) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55c0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5560) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55c0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5560) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55c0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5560) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55c0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5560) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c55c0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5560) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5590) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5530) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5590) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5530) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5590) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5530) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5590) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5530) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5590) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5530) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/code.py", {st_mode=S_IFREG|0644, st_size=10622, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/code.py", {st_mode=S_IFREG|0644, st_size=10622, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/code.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=9978, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c4810)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=9978, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a~)\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 9979) = 9978
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/codeop.py", {st_mode=S_IFREG|0644, st_size=6326, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/codeop.py", {st_mode=S_IFREG|0644, st_size=6326, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/codeop.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=6520, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c39a0)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=6520, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\266\30\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 6521) = 6520
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pydoc.py", {st_mode=S_IFREG|0644, st_size=109545, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pydoc.py", {st_mode=S_IFREG|0644, st_size=109545, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/pydoc.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=85378, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c4770)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=85378, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\351\253\1\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 85379) = 85378
read(26, "", 1)                         = 0
close(26)                               = 0
mmap(NULL, 262144, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x7fa3e7dd3000
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pkgutil.py", {st_mode=S_IFREG|0644, st_size=24276, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/pkgutil.py", {st_mode=S_IFREG|0644, st_size=24276, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/pkgutil.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=18628, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c3900)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=18628, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340a\324^\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 18629) = 18628
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/sysconfig.py", {st_mode=S_IFREG|0644, st_size=24914, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/sysconfig.py", {st_mode=S_IFREG|0644, st_size=24914, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/sysconfig.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16129, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c3900)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16129, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\323\227\340aRa\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16130) = 16129
read(26, "", 1)                         = 0
close(26)                               = 0
getcwd("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build", 1024) = 67
newfstatat(AT_FDCWD, "/home", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio", {st_mode=S_IFDIR|0750, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/Modules/Setup", 0x7ffe779c3340, 0) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/Modules/Setup.local", 0x7ffe779c3340, 0) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python/slicer", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/bin/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules", {st_mode=S_IFDIR|0775, st_size=16384, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-loadable-modules/Python", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/lib/Slicer-5.4/qt-scripted-modules", {st_mode=S_IFDIR|0775, st_size=4096, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/_sysconfigdata__linux2_.py", {st_mode=S_IFREG|0644, st_size=18320, ...}, 0) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/_sysconfigdata__linux2_.py", {st_mode=S_IFREG|0644, st_size=18320, ...}, 0) = 0
openat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/__pycache__/_sysconfigdata__linux2_.cpython-39.pyc", O_RDONLY|O_CLOEXEC) = 26
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16219, ...}, AT_EMPTY_PATH) = 0
ioctl(26, TCGETS, 0x7ffe779c29d0)       = -1 ENOTTY (Inappropriate ioctl for device)
lseek(26, 0, SEEK_CUR)                  = 0
lseek(26, 0, SEEK_CUR)                  = 0
newfstatat(26, "", {st_mode=S_IFREG|0644, st_size=16219, ...}, AT_EMPTY_PATH) = 0
read(26, "a\r\r\n\0\0\0\0\307\20]e\220G\0\0\343\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16220) = 16219
read(26, "", 1)                         = 0
close(26)                               = 0
newfstatat(AT_FDCWD, "/home", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio", {st_mode=S_IFDIR|0750, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents", {st_mode=S_IFDIR|0755, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9", {st_mode=S_IFDIR|0775, st_size=12288, ...}, AT_SYMLINK_NOFOLLOW) = 0
newfstatat(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/python-install/lib/python3.9/config-3.9", {st_mode=S_IFDIR|0775, st_size=4096, ...}, AT_SYMLINK_NOFOLLOW) = 0
pipe2([26, 27], 0)                      = 0
lseek(1, 0, SEEK_CUR)                   = -1 ESPIPE (Illegal seek)
dup(1)                                  = 28
dup2(27, 1)                             = 1
close(27)                               = 0
mmap(NULL, 8392704, PROT_NONE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_STACK, -1, 0) = 0x7fa3e75d2000
mprotect(0x7fa3e75d3000, 8388608, PROT_READ|PROT_WRITE) = 0
rt_sigprocmask(SIG_BLOCK, ~[], [], 8)   = 0
clone3({flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID, child_tid=0x7fa3e7dd2910, parent_tid=0x7fa3e7dd2910, exit_signal=0, stack=0x7fa3e75d2000, stack_size=0x7fd1c0, tls=0x7fa3e7dd2640} => {parent_tid=[1377243]}, 88) = 1377243
rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
pipe2([27, 29], 0)                      = 0
lseek(2, 0, SEEK_CUR)                   = -1 ESPIPE (Illegal seek)
dup(2)                                  = 30
dup2(29, 2)                             = 2
close(29)                               = 0
mmap(NULL, 8392704, PROT_NONE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_STACK, -1, 0) = 0x7fa3e6dd1000
mprotect(0x7fa3e6dd2000, 8388608, PROT_READ|PROT_WRITE) = 0
rt_sigprocmask(SIG_BLOCK, ~[], [], 8)   = 0
clone3({flags=CLONE_VM|CLONE_FS|CLONE_FILES|CLONE_SIGHAND|CLONE_THREAD|CLONE_SYSVSEM|CLONE_SETTLS|CLONE_PARENT_SETTID|CLONE_CHILD_CLEARTID, child_tid=0x7fa3e75d1910, parent_tid=0x7fa3e75d1910, exit_signal=0, stack=0x7fa3e6dd1000, stack_size=0x7fd1c0, tls=0x7fa3e75d1640} => {parent_tid=[1377244]}, 88) = 1377244
rt_sigprocmask(SIG_SETMASK, [], NULL, 8) = 0
readlink("/tmp", 0x7ffe779c5160, 1023)  = -1 EINVAL (Invalid argument)
statx(AT_FDCWD, "/tmp/Slicer-antonio", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFDIR|0775, stx_size=4096, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
unlink("/tmp/Slicer-antonio/Slicer_31938_20231123_102003_826.log") = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
access("/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/CMakeCache.txt", F_OK) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
openat(AT_FDCWD, "/proc/cpuinfo", O_RDONLY) = 32
newfstatat(32, "", {st_mode=S_IFREG|0444, st_size=0, ...}, AT_EMPTY_PATH) = 0
read(32, "processor\t: 0\nvendor_id\t: Genuin"..., 1024) = 1024
read(32, "ock_detect avx_vnni dtherm ida a"..., 1024) = 1024
read(32, "cx8 apic sep mtrr pge mca cmov p"..., 1024) = 1024
read(32, "apic_reg vid ple shadow_vmcs ept"..., 1024) = 1024
read(32, "c rdrand lahf_lm abm 3dnowprefet"..., 1024) = 1024
read(32, "i7-12700H\nstepping\t: 3\nmicrocode"..., 1024) = 1024
read(32, "e waitpkg gfni vaes vpclmulqdq r"..., 1024) = 1024
read(32, "gb rdtscp lm constant_tsc art ar"..., 1024) = 1024
read(32, " spec_store_bypass swapgs eibrs_"..., 1024) = 1024
read(32, "lexpriority ept vpid ept_ad fsgs"..., 1024) = 1024
read(32, "ings\t: 20\ncore id\t\t: 12\ncpu core"..., 1024) = 1024
read(32, "ch_capabilities\nvmx flags\t: vnmi"..., 1024) = 1024
read(32, "mperf tsc_known_freq pni pclmulq"..., 1024) = 1024
read(32, "ress sizes\t: 39 bits physical, 4"..., 1024) = 1024
read(32, "lflushopt clwb intel_pt sha_ni x"..., 1024) = 1024
read(32, " yes\ncpuid level\t: 32\nwp\t\t: yes\n"..., 1024) = 1024
read(32, "expriority apicv tsc_offset vtpr"..., 1024) = 1024
read(32, " pdcm sse4_1 sse4_2 x2apic movbe"..., 1024) = 1024
read(32, "ineIntel\ncpu family\t: 6\nmodel\t\t:"..., 1024) = 1024
read(32, "ida arat pln pts hwp hwp_notify "..., 1024) = 1024
read(32, "ca cmov pat pse36 clflush dts ac"..., 1024) = 1024
read(32, "_vmcs ept_mode_based_exec tsc_sc"..., 1024) = 1024
read(32, "m 3dnowprefetch cpuid_fault epb "..., 1024) = 1024
read(32, "\t: 3\nmicrocode\t: 0x430\ncpu MHz\t\t"..., 1024) = 1024
read(32, "vaes vpclmulqdq rdpid movdiri mo"..., 1024) = 1024
read(32, "constant_tsc art arch_perfmon pe"..., 1024) = 1024
read(32, "ypass swapgs eibrs_pbrsb\nbogomip"..., 1024) = 1024
read(32, " ept vpid ept_ad fsgsbase tsc_ad"..., 1024) = 1024
read(32, "core id\t\t: 29\ncpu cores\t: 14\napi"..., 1024) = 1024
read(32, "ities\nvmx flags\t: vnmi preemptio"..., 1024) = 1024
read(32, "_known_freq pni pclmulqdq dtes64"..., 1024) = 1024
read(32, "s\t: 39 bits physical, 48 bits vi"..., 1024) = 1024
read(32, "t clwb intel_pt sha_ni xsaveopt "..., 1024) = 708
read(32, "", 1024)                      = 0
close(32)                               = 0
brk(0x55ff1dd1a000)                     = 0x55ff1dd1a000
brk(0x55ff1dd3b000)                     = 0x55ff1dd3b000
brk(0x55ff1dd64000)                     = 0x55ff1dd64000
brk(0x55ff1dd8c000)                     = 0x55ff1dd8c000
brk(0x55ff1ddad000)                     = 0x55ff1ddad000
brk(0x55ff1ddce000)                     = 0x55ff1ddce000
brk(0x55ff1ddef000)                     = 0x55ff1ddef000
brk(0x55ff1de17000)                     = 0x55ff1de17000
brk(0x55ff1de38000)                     = 0x55ff1de38000
brk(0x55ff1de59000)                     = 0x55ff1de59000
brk(0x55ff1de7a000)                     = 0x55ff1de7a000
brk(0x55ff1dea2000)                     = 0x55ff1dea2000
brk(0x55ff1dec3000)                     = 0x55ff1dec3000
brk(0x55ff1dee4000)                     = 0x55ff1dee4000
brk(0x55ff1df05000)                     = 0x55ff1df05000
brk(0x55ff1df2d000)                     = 0x55ff1df2d000
brk(0x55ff1df4e000)                     = 0x55ff1df4e000
brk(0x55ff1df6f000)                     = 0x55ff1df6f000
brk(0x55ff1df90000)                     = 0x55ff1df90000
brk(0x55ff1dfb8000)                     = 0x55ff1dfb8000
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
openat(AT_FDCWD, "/proc/meminfo", O_RDONLY) = 32
newfstatat(32, "", {st_mode=S_IFREG|0444, st_size=0, ...}, AT_EMPTY_PATH) = 0
read(32, "MemTotal:       16156924 kB\nMemF"..., 1024) = 1024
read(32, "pted:     0 kB\nAnonHugePages:   "..., 1024) = 395
read(32, "", 1024)                      = 0
close(32)                               = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", O_RDWR|O_CREAT|O_CLOEXEC, 0666) = 32
close(32)                               = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini.lock", O_RDWR|O_CREAT|O_EXCL|O_CLOEXEC, 0666) = 32
flock(32, LOCK_EX|LOCK_NB)              = 0
openat(AT_FDCWD, "/proc/sys/kernel/random/boot_id", O_RDONLY|O_CLOEXEC) = 33
read(33, "738c301f-54a0-4d05-bc07-07f88f34"..., 36) = 36
close(33)                               = 0
openat(AT_FDCWD, "/var/lib/dbus/machine-id", O_RDONLY|O_CLOEXEC) = 33
read(33, "10b971ac1a304176906b1f6a23827476", 32) = 32
close(33)                               = 0
uname({sysname="Linux", nodename="LOAMRI-Legion", ...}) = 0
getpid()                                = 1377215
readlink("/proc/1377215/exe", "/home/antonio/Documents/Slicer-S"..., 256) = 85
getpid()                                = 1377215
write(32, "1377215\nSlicerApp-real\nLOAMRI-Le"..., 107) = 107
fdatasync(32)                           = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", F_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", W_OK) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT|AT_SYMLINK_NOFOLLOW, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
openat(AT_FDCWD, "/home/antonio/.config/slicer.org", O_RDWR|O_CLOEXEC|O_TMPFILE, 0600) = 33
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", R_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", W_OK) = 0
access("/home/antonio/.config/slicer.org/Slicer.ini", X_OK) = -1 EACCES (Permission denied)
fchmod(33, 0664)                        = 0
statx(33, "", AT_STATX_SYNC_AS_STAT|AT_EMPTY_PATH, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=0, ...}) = 0
write(33, "[General]\nDatabaseDirectory_0.7."..., 15504) = 15504
write(33, "RecentFiles\\7\\file=@Variant(\\0\\0"..., 5743) = 5743
lseek(33, 0, SEEK_SET)                  = 0
fdatasync(33)                           = 0
linkat(AT_FDCWD, "/proc/self/fd/33", AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_SYMLINK_FOLLOW) = -1 EEXIST (File exists)
linkat(AT_FDCWD, "/proc/self/fd/33", AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini.iHMkiG", AT_SYMLINK_FOLLOW) = 0
close(33)                               = 0
rename("/home/antonio/.config/slicer.org/Slicer.ini.iHMkiG", "/home/antonio/.config/slicer.org/Slicer.ini") = 0
statx(AT_FDCWD, "/home/antonio/.config/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=21247, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
close(32)                               = 0
unlink("/home/antonio/.config/slicer.org/Slicer.ini.lock") = 0
access("/home/antonio/.config/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c57e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/home/antonio/.config/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5780) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c57e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5780) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org/Slicer.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c57e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org/Slicer.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5780) = -1 ENOENT (No such file or directory)
access("/etc/xdg/xdg-cinnamon/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c57e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/xdg-cinnamon/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5780) = -1 ENOENT (No such file or directory)
access("/etc/xdg/slicer.org.ini", F_OK) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c57e0) = -1 ENOENT (No such file or directory)
statx(AT_FDCWD, "/etc/xdg/slicer.org.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, 0x7ffe779c5780) = -1 ENOENT (No such file or directory)
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
statx(AT_FDCWD, "/home/antonio/Documents/Slicer-SuperBuild-Debug-5.4.0/Slicer-build/slicer.org/Slicer-31938.ini", AT_STATX_SYNC_AS_STAT, STATX_ALL, {stx_mask=STATX_ALL|STATX_MNT_ID, stx_attributes=0, stx_mode=S_IFREG|0664, stx_size=254, ...}) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
newfstatat(AT_FDCWD, "/etc/localtime", {st_mode=S_IFREG|0644, st_size=1444, ...}, 0) = 0
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
write(5, "\1\0\0\0\0\0\0\0", 8)         = 8
--- SIGSEGV {si_signo=SIGSEGV, si_code=SEGV_MAPERR, si_addr=0x7fa47d6f96b8} ---
+++ killed by SIGSEGV (core dumped) +++
Segmentation fault (core dumped)

I don’t know if changed something…

lassoan · November 23, 2023, 8:52pm

Can you enable the current user to access this file, too?

/home/antonio/.config/slicer.org/Slicer.ini

acsenrafilho · November 24, 2023, 11:35am

Sure, but I listed all files in .config/slicer.org path and all of them were already to access by me.

antonio@LOAMRI-Legion:~/.config/slicer.org$ ls -la
total 296
drwxrwxr-x  2 antonio antonio  4096 Nov 23 18:14 .
drwxr-xr-x 29 antonio antonio  4096 Nov 23 18:14 ..
-rw-rw-r--  1 antonio antonio  2116 Nov 18 13:28 qSlicerAboutDialogTest1.ini
-rw-rw-r--  1 antonio antonio  2549 Nov 18 13:28 qSlicerAnnotationsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2579 Nov 18 13:28 qSlicerAnnotationsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2116 Nov 18 13:28 qSlicerApplicationTest1.ini
-rw-rw-r--  1 antonio antonio  2126 Nov 18 13:29 qSlicerAppMainWindowTest1.ini
-rw-rw-r--  1 antonio antonio  2156 Nov 18 13:28 qSlicerCamerasModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2186 Nov 18 13:28 qSlicerCamerasModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  1939 Nov 18 13:28 qSlicerCLIModuleTest1.ini
-rw-rw-r--  1 antonio antonio  2151 Nov 18 13:28 qSlicerColorsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2181 Nov 18 13:28 qSlicerColorsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  3232 Nov 18 13:28 qSlicerCropVolumeModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  3262 Nov 18 13:28 qSlicerCropVolumeModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2111 Nov 18 13:28 qSlicerDataDialogTest1.ini
-rw-rw-r--  1 antonio antonio  2286 Nov 18 13:28 qSlicerDataModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2316 Nov 18 13:28 qSlicerDataModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2191 Nov 18 13:29 qSlicerDynamicModelerModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2221 Nov 18 13:29 qSlicerDynamicModelerModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2146 Nov 18 13:28 qSlicerErrorReportDialogTest1.ini
-rw-rw-r--  1 antonio antonio  2176 Nov 18 13:28 qSlicerEventBrokerModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2206 Nov 18 13:28 qSlicerEventBrokerModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  3256 Nov 18 13:28 qSlicerMarkupsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  3286 Nov 18 13:28 qSlicerMarkupsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2264 Nov 18 13:28 qSlicerModelsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2294 Nov 18 13:28 qSlicerModelsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2151 Nov 18 13:28 qSlicerModelsModuleWidgetTest1.ini
-rw-rw-r--  1 antonio antonio  2171 Nov 18 13:28 qSlicerModelsModuleWidgetTestScene.ini
-rw-rw-r--  1 antonio antonio  2116 Nov 18 13:28 qSlicerModulePanelTest1.ini
-rw-rw-r--  1 antonio antonio   130 Nov 18 13:28 qSlicerModulePanelTest2.ini
-rw-rw-r--  1 antonio antonio  2141 Nov 18 13:28 qSlicerMouseModeToolBarTest1.ini
-rw-rw-r--  1 antonio antonio  2146 Nov 18 13:28 qSlicerPlotsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2176 Nov 18 13:28 qSlicerPlotsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  1949 Nov 18 13:28 qSlicerPyCLIModuleTest1.ini
-rw-rw-r--  1 antonio antonio  2161 Nov 18 13:28 qSlicerReformatModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2191 Nov 18 13:28 qSlicerReformatModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2238 Nov 18 13:28 qSlicerSaveDataDialogCustomFileWriterTest.ini
-rw-rw-r--  1 antonio antonio  2171 Nov 18 13:28 qSlicerSceneViewsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2201 Nov 18 13:28 qSlicerSceneViewsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2459 Nov 18 13:28 qSlicerSegmentationsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2489 Nov 18 13:28 qSlicerSegmentationsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2166 Nov 18 13:28 qSlicerSequencesModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2196 Nov 18 13:28 qSlicerSequencesModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2461 Nov 18 13:28 qSlicerSubjectHierarchyModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2491 Nov 18 13:28 qSlicerSubjectHierarchyModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2151 Nov 18 13:28 qSlicerTablesModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2181 Nov 18 13:28 qSlicerTablesModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2263 Nov 18 13:28 qSlicerTerminologiesModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2293 Nov 18 13:28 qSlicerTerminologiesModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2146 Nov 18 13:28 qSlicerTextsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2176 Nov 18 13:28 qSlicerTextsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  3232 Nov 18 13:28 qSlicerTransformsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  3262 Nov 18 13:28 qSlicerTransformsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2612 Nov 18 13:28 qSlicerUnitsModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2642 Nov 18 13:28 qSlicerUnitsModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2196 Nov 18 13:28 qSlicerViewControllersModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2226 Nov 18 13:28 qSlicerViewControllersModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2410 Nov 18 13:28 qSlicerVolumeRenderingModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2440 Nov 18 13:28 qSlicerVolumeRenderingModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2410 Nov 18 13:28 qSlicerVolumeRenderingModuleWidgetTest1.ini
-rw-rw-r--  1 antonio antonio  2410 Nov 18 13:28 qSlicerVolumeRenderingModuleWidgetTest2.ini
-rw-rw-r--  1 antonio antonio  2171 Nov 18 13:28 qSlicerVolumesIOOptionsWidgetTest1.ini
-rw-rw-r--  1 antonio antonio  3217 Nov 18 13:28 qSlicerVolumesModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  3247 Nov 18 13:28 qSlicerVolumesModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio  2156 Nov 18 13:28 qSlicerVolumesModuleWidgetTest1.ini
-rw-rw-r--  1 antonio antonio  2156 Nov 18 13:28 qSlicerWelcomeModuleGenericTest.ini
-rw-rw-r--  1 antonio antonio  2186 Nov 18 13:28 qSlicerWelcomeModuleWidgetGenericTest.ini
-rw-rw-r--  1 antonio antonio 20697 Nov 23 18:14 Slicer.ini
-rw-rw-r--  1 antonio antonio   120 Nov 18 13:35 Slicer-tmp.ini

I made a search in the Slicer-Superbuild folder to look at the files with root access, and there are two of them:

antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0$ find . -user root
./Slicer-build/lib/Slicer-5.4/qt-scripted-modules/SegmentEditorEffects/__pycache__/__init__.cpython-39.pyc
./VTK-build/lib/python3.9/site-packages/vtkmodules/util/__pycache__/numpy_support.cpython-39.pyc
antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0$ ls -la ./Slicer-build/lib/Slicer-5.4/qt-scripted-modules/SegmentEditorEffects/__pycache__/__init__.cpython-39.pyc
-rw-r--r-- 1 root root 1704 Nov 21 18:02 ./Slicer-build/lib/Slicer-5.4/qt-scripted-modules/SegmentEditorEffects/__pycache__/__init__.cpython-39.pyc
antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0$ ls -la ./VTK-build/lib/python3.9/site-packages/vtkmodules/util/__pycache__/numpy_support.cpython-39.pyc
-rw-r--r-- 1 root root 6592 Nov 21 18:02 ./VTK-build/lib/python3.9/site-packages/vtkmodules/util/__pycache__/numpy_support.cpython-39.pyc

They should be in this way? I do I need to change it to my user access?
By the way, I am wandering why those changes in root access occur on those files. Is there any clue what did I do in the build process that may change it?

By the way, thank you lassoan for all the attention on this matter.

pieper · November 24, 2023, 12:58pm

Maybe when you ran sudo ./Slicer some python files got compiled with root-only access. Maybe do chown -R antonio:antonio . in your superbuild directory .config. Also what linux is this? Do the slicer binary packages run okay on this computer?

acsenrafilho · November 24, 2023, 3:31pm

Hi @pieper , thanks for the ideas

I’ve executed the chown -R command on Slicer-Superbuild and .config/slicer.org folder. All the files were changed to my user access, however the ./Slicer execution still crashes.

Sorry to not given the linux SO details before. I am using a fresh install of Linux Mint 21.2 (which is based on Ubuntu 22.04) (link for Linux Mint release notes):

antonio@LOAMRI-Legion:~/Documents/Slicer-SuperBuild-Debug-5.4.0$ uname -a
Linux LOAMRI-Legion 5.15.0-89-generic #99-Ubuntu SMP Mon Oct 30 20:42:41 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux

I also downloaded the binary packages for Slicer v5.4.0 and it executes normally.
I made the same execution using the command ./Slicer --launch-verbose --application-information just to see if this could help in anything.

antonio@LOAMRI-Legion:~/Documents/Slicer-5.4.0-linux-amd64$ ./Slicer --launcher-verbose --application-information
info: AdditionalSettingsFilePath []
info: LauncherSplashImagePath [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/Slicer-SplashScreen.png]
info: LauncherSplashScreenHideDelayMs [3000]
info: ApplicationToLaunch [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/SlicerApp-real]
info: ApplicationToLaunchArguments []
info: AdditionalSettingsFilePath []
info: LauncherDir [/home/antonio/Documents/Slicer-5.4.0-linux-amd64]
info: LauncherName [Slicer]
info: OrganizationDomain [slicer.org]
info: OrganizationName [slicer.org]
info: ApplicationName [Slicer]
info: ApplicationRevision [31938]
info: SettingsFileName [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/SlicerLauncherSettings.ini]
info: SettingsDir [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin]
info: UserAdditionalSettingsDir [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org]
info: UserAdditionalSettingsFileName [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Slicer-31938.ini]
info: UserAdditionalSettingsFileBaseName []
info: AdditionalSettingsDir []
info: AdditionalSettingsExcludeGroups []
info: LauncherNoSplashScreen [0]
info: AdditionalLauncherHelpShortArgument [-h]
info: AdditionalLauncherHelpLongArgument [--help]
info: AdditionalLauncherNoSplashArguments [--no-splash,--help,--version,--home,--program-path,--no-main-window,--settings-path,--temporary-path]
info: DetachApplicationToLaunch [0]
info: LoadEnvironment [-1]
info: LauncherSplashImagePath [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/Slicer-SplashScreen.png]
info: LauncherSplashScreenHideDelayMs [3000]
info: ApplicationToLaunch [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/SlicerApp-real]
info: ApplicationToLaunchArguments []
info: <APPLAUNCHER_DIR> -> [/home/antonio/Documents/Slicer-5.4.0-linux-amd64]
info: <APPLAUNCHER_NAME> -> [Slicer]
info: <APPLAUNCHER_SETTINGS_DIR> (RegularSettings) -> [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin]
info: <APPLAUNCHER_SETTINGS_DIR> (UserAdditionalSettings) -> [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org]
info: <APPLAUNCHER_SETTINGS_DIR> (AdditionalSettings) -> [<APPLAUNCHER_SETTINGS_DIR-NOTFOUND>]
info: <PATHSEP> -> [:]
info: Setting env. variable [QTWEBENGINE_DISABLE_SANDBOX]:1
info: Setting env. variable [SLICER_HOME]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/..
info: Setting env. variable [PIP_REQUIRE_VIRTUALENV]:0
info: Setting env. variable [ITK_AUTOLOAD_PATH]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/ITKFactories
info: Setting env. variable [PYTHONNOUSERSITE]:1
info: Setting env. variable [PYTHONHOME]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python
info: Setting env. variable [SSL_CERT_FILE]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../share/Slicer-5.4/Slicer.crt
info: Setting env. variable [LibraryPaths]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../bin:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Teem-1.12.0:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/PythonQt:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/site-packages/numpy/core:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/site-packages/numpy/lib
info: Setting env. variable [LD_LIBRARY_PATH]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../bin:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Teem-1.12.0:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/PythonQt:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/site-packages/numpy/core:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/site-packages/numpy/lib
info: Setting env. variable [PATH]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../bin:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/cli-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-loadable-modules
info: Setting env. variable [QT_PLUGIN_PATH]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/QtPlugins
info: Setting env. variable [PYTHONPATH]:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/qt-scripted-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/qt-scripted-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-scripted-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-loadable-modules:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/vtkTeem:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../bin/Python:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Slicer-5.4/qt-loadable-modules/Python:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/lib-dynload:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/Python/lib/python3.9/site-packages:/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/../lib/python3.9/site-packages
info: Starting [/home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin/SlicerApp-real]
info: argument [--application-information]
info: launcher-timeout (ms) [-1000]
info: DisableSplash [0]
Session start time .......: 2023-11-24 12:30:01
Slicer version ...........: 5.4.0 (revision 31938 / 311cb26) linux-amd64 - installed release
Operating system .........: Linux / 5.15.0-89-generic / #99-Ubuntu SMP Mon Oct 30 20:42:41 UTC 2023 / UTF-8 - 64-bit
Memory ...................: 15778 MB physical, 2047 MB virtual
CPU ......................: GenuineIntel 12th Gen Intel(R) Core(TM) i7-12700H, 14 cores, 20 logical processors
VTK configuration ........: OpenGL2 rendering, Sequential threading
Qt configuration .........: version 5.15.2, with SSL, requested OpenGL 3.2 (core profile)
Internationalization .....: disabled, language=
Developer mode ...........: disabled
Application path .........: /home/antonio/Documents/Slicer-5.4.0-linux-amd64/bin
Additional module paths ..: slicer.org/Extensions-31938/AnomalousFiltersExtension/lib/Slicer-5.4/cli-modules, slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/cli-modules, slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/qt-loadable-modules, slicer.org/Extensions-31938/SlicerDMRI/lib/Slicer-5.4/qt-scripted-modules, slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/cli-modules, slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/qt-loadable-modules, slicer.org/Extensions-31938/UKFTractography/lib/Slicer-5.4/qt-scripted-modules
Switch to module:  "Welcome"

pieper · November 24, 2023, 6:10pm

Hmm, that’s odd. I don’t have any experience with linux mint, but I can say that I did a build from source this morning on a ubuntu 20.04 with no issues.

Maybe @acsenrafilho you could start a fresh build and see if the issue recurs? Or perhaps as a fallback install docker and try a different distribution.

acsenrafilho · November 25, 2023, 3:58pm

Indeed this is odd. I have been using Slicer on Linux Mint for several years (since version 19) and it is the first time I have seen this issue with file permissions on execution.

I am wondering if I may have done something wrong with the dependencies installations or if the cmake setup had some parameters that I need to change.

Just to be sure:

I followed the installation procedure in the Slicer documentation (relative to Linux section)
I installed the dependencies following the Ubuntu recommendations (since Linux Mint is based on Ubuntu)
The cmake version used was 3.28 which I installed from source (using the cmake installation recommendations)

The rest of the process I don´t know what gives us a clue… In your opinion, what could be the most probable issue? is it something about Python? The OpenSSL error at first starting execution have something related to it?

I will try to build Slicer again, but I don´t know what parameter may be better to change. Is there any recommendation? or try to use the “default” build again?

pieper · November 25, 2023, 4:09pm

I guess I would try the default again. I typically use a command like

time make -j $(nproc) |& tee buildlog

to be able to look for anything suspicious in the buildlog. But there really shouldn’t be anything requiring root permissions just to run a fresh build.

My other suggestion would be to build in Debug mode or RelWithDebInfo so you can step through and see where the crash happens.

acsenrafilho · November 27, 2023, 1:35pm

Great tip @pieper, I have made the build using the default configuration and exported the terminal output in the file bellow:
buildlog

This is Google Drive link, please informs me if you have some problem with the access.

I tried to find something in the log, but I confess that I did not know how to filter it properly.

Looking forward for any help.

By the way, the ./Slicer execution failed in the same way before.

pieper · December 1, 2023, 10:07pm

I don’t see anything out of the ordinary in the build log.

I think single-stepping through the startup process would be the most informative: C++ debugging on GNU/Linux systems — 3D Slicer documentation

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Slicer fresh build crash start, but executes with sudo permissions

Terminal output

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