Using Slicer from Command-Line - Singularity container

Support
1

Operating system: linux ubuntu 20.04.3 (Focal Fossa)
Slicer version: 4.11.20210226
Expected behavior:
Running slicer from a singularity container in our cluster with command xvfb-run -a --no-splash should resolve without problems

Actual behavior: Slicer crashes after producing the following error:

QStandardPaths: error creating runtime directory /run/user/3115426 (No such file or directory)

/Slicer/lib/Slicer-4.11/qt-loadable-modules/vtkSlicerCropVolumeModuleLogicPython.so: failed to map segment from shared object

/Slicer/lib/Slicer-4.11/qt-loadable-modules/vtkSlicerDICOMLibModuleLogicPython.so: failed to map segment from shared object

(xvfb-run : we would like to run slicer without invoking GUI or X11_. Please advice. Thanks

2

I have no problem running Slicer on ubuntu 20.04 with xvfb-run (not using singularity). Looks like you have a problem with the Slicer paths because those libraries should be in the distribution and in the paths set by the launcher.

3

Thanks Steve, for bringing this up to me.
I am setting my library path in a definition files as:
LD_LIBRARY_PATH=/home/user/Slicer/lib:/home/user/Slicer/share/
but I am still getting the same error from the command line.
Interestingly, on my local laptop Slicer does not crash, instead it prompts:
Qt: Session management error: None of the authentication protocols specified are supported
QStandardPaths: error creating runtime directory /run/user/1000 (No such file or directory)

and eventually :
Switch to module: “Welcome”

Could be an issue with permissions? the tmp folder for slicer seems right (drwxrwxr-x)?

4

We would definitely suggest using the launcher rather than setting paths by hand.

The errors reported at startup can probably be ignored, at least for now. Once it says “Switch to module: “Welcome”" slicer should be running fine (maybe use vnc if you want to interact with it) or use the command line arguments to give slicer code to run.

5

Thanks Steve
running Slicer with the launcher : xvfb-run -a ${SINGULARITY_ROOTFS}/Slicer/Slicer --launcher-verbose
goes a step further before crashing and prompts: terminate called after throwing an instance of ‘St9bad_alloc’
what(): std::bad_alloc
error: [/Slicer/bin/SlicerApp-real] exit abnormally - Report the problem.

6

Using launcher and: xvfb-run -a ${SINGULARITY_ROOTFS}/Slicer/Slicer --disable-scripted-loadable-module seem to work. we get switch to module ‘welcome’

7

xvfb-run -a ${SINGULARITY_ROOTFS}/Slicer/Slicer --disable-builtinscripted-loadable-module fails with the same error as above: [/Slicer/bin/SlicerApp-real] exit abnormally

8

I did a strace using --launch xterm, with the output below, in the hopes it might shed some light. With X11 enabled the main gui appears twice before ultimately crashing.

9

stat("/Slicer/bin/Slicer-SplashScreen.png", {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
openat(AT_FDCWD, “/Slicer/bin/Slicer-SplashScreen.png”, O_RDONLY) = 10
fcntl(10, F_SETFD, FD_CLOEXEC) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
read(10, “\211PNG\r\n\32\n\0\0\0\rIHDR\0\0\2=\0\0\1x\10\2\0\0\0000\216\337”…, 16384) = 16384
mmap(NULL, 864256, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2b564ef42000
brk(0x1c18000) = 0x1c18000
read(10, “\261X,]\323\273\f\32<d\364\350\321\244\343Q\233\33\255\361\330\261c\237\177\376\271\370\365\316;\357”…, 159) = 159
read(10, “\277\350+\273x\1\0000\27\364v\200XK\371\245\313\202\333u\345\307\37\1778\377c\367^)\322\354”…, 16384) = 16384
read(10, “\376\235\f\330\0\0;\273IDAT\241\267\226cP\355d6%b(g)N+R\316\nUI”…, 16384) = 15417
read(10, “”, 967) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
fstat(10, {st_mode=S_IFREG|0644, st_size=48344, …}) = 0
brk(0x1c10000) = 0x1c10000
brk(0x1c0c000) = 0x1c0c000
close(10) = 0
brk(0x1c08000) = 0x1c08000
uname({sysname=“Linux”, nodename=“beluga2.int.ets1.calculquebec.ca”, …}) = 0
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\2\0\4\0\304\7\0\0\20\0\0\0\1\0\0\0\2\0\4\0\304\7\0\0\0\10\0\0000@@\0"…, iov_len=492}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 492
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1\0\241\0\0\0\0\0\\1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\22\0\7\0\2\0\0\3\\1\0\0\37\0\0\0\10\0\4\0\1\0\0\0C\10\0\0\f@\5\0"…, iov_len=100}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 100
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1\0\245\0\0\0\0\0]\1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
getpid() = 52860
futex(0x2b564e3da0c8, FUTEX_WAKE_PRIVATE, 2147483647) = 0
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/cli-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/qt-loadable-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/cli-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/qt-loadable-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/bin/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/cli-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/qt-loadable-modules/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Teem-1.12.0/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/python3.6/site-packages/numpy/core/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/python3.6/site-packages/numpy/lib/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/.singularity.d/libs/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/etc/ld.so.cache”, O_RDONLY|O_CLOEXEC) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=32924, …}) = 0
mmap(NULL, 32924, PROT_READ, MAP_PRIVATE, 10, 0) = 0x2b564ed23000
close(10) = 0
openat(AT_FDCWD, “/usr/lib/x86_64-linux-gnu/libXcursor.so.1”, O_RDONLY|O_CLOEXEC) = 10
read(10, “\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\3605\0\0\0\0\0\0”…, 832) = 832
fstat(10, {st_mode=S_IFREG|0644, st_size=47768, …}) = 0
mmap(NULL, 49944, PROT_READ, MAP_PRIVATE|MAP_DENYWRITE, 10, 0) = 0x2b564f015000
mmap(0x2b564f018000, 24576, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 10, 0x3000) = 0x2b564f018000
mmap(0x2b564f01e000, 8192, PROT_READ, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 10, 0x9000) = 0x2b564f01e000
mmap(0x2b564f020000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 10, 0xa000) = 0x2b564f020000
close(10) = 0
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/cli-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/SlicerDMRI/lib/Slicer-4.11/qt-loadable-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/cli-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/NA-MIC/Extensions-29738/UKFTractography/lib/Slicer-4.11/qt-loadable-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/bin/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/cli-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Slicer-4.11/qt-loadable-modules/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Teem-1.12.0/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/python3.6/site-packages/numpy/core/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/Slicer/bin/…/lib/Python/lib/python3.6/site-packages/numpy/lib/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/.singularity.d/libs/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/lib/x86_64-linux-gnu/libXfixes.so.3”, O_RDONLY|O_CLOEXEC) = 10
read(10, “\177ELF\2\1\1\0\0\0\0\0\0\0\0\0\3\0>\0\1\0\0\0\220\25\0\0\0\0\0\0”…, 832) = 832
fstat(10, {st_mode=S_IFREG|0644, st_size=22656, …}) = 0
mmap(NULL, 2117912, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 10, 0) = 0x2b564f022000
mprotect(0x2b564f027000, 2093056, PROT_NONE) = 0
mmap(0x2b564f226000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 10, 0x4000) = 0x2b564f226000
close(10) = 0
mprotect(0x2b564f226000, 4096, PROT_READ) = 0
mprotect(0x2b564f020000, 4096, PROT_READ) = 0
munmap(0x2b564ed23000, 32924) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/locale.alias”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=82746, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 1024
read(10, “A.ISO-8859-6\t\t\t\tar_AA.ISO8859-6\n”…, 1024) = 1024
read(10, “.ISO-8859-6\t\t\t\tar_LB.ISO8859-6\na”…, 1024) = 1024
read(10, “8859-6\nar_TN.utf8\t\t\t\t\tar_TN.UTF-”…, 1024) = 1024
read(10, “UTF-8\nbo_IN.utf8\t\t\t\t\tbo_IN.UTF-8”…, 1024) = 1024
read(10, “9-1\nca_ES.iso885915\t\t\t\tca_ES.ISO”…, 1024) = 1024
read(10, “s_CZ.ISO8859-2\ncs_CZ.ISO_8859-2\t”…, 1024) = 1024
read(10, “de_DE.ISO8859-15\nde_AT\t\t\t\t\t\tde_A”…, 1024) = 1024
read(10, “\t\t\tde_DE.ISO8859-15\nde_DE.88591\t”…, 1024) = 1024
read(10, “l_GR.ISO8859-7\nel_GR\t\t\t\t\t\tel_GR.”…, 1024) = 1024
read(10, “591\t\t\t\t\ten_GB.ISO8859-1\nen_GB.88”…, 1024) = 1024
read(10, “.UTF-8\nen_PH.iso88591\t\t\t\t\ten_PH.”…, 1024) = 1024
read(10, “\t\ten_ZA.ISO8859-1\nen_ZA.88591.en”…, 1024) = 1024
read(10, “O.ISO-8859-1\t\t\t\tes_CO.ISO8859-1\n”…, 1024) = 1024
read(10, “859-1\nes_HN.ISO-8859-1\t\t\t\tes_HN.”…, 1024) = 1024
read(10, “\nes_SV.iso885915\t\t\t\tes_SV.ISO885”…, 1024) = 1024
read(10, “\t\t\t\teu_ES.ISO8859-1\neu_ES.iso885”…, 1024) = 1024
read(10, “\t\t\tfo_FO.ISO8859-15\nfo_FO.utf8\t\t”…, 1024) = 1024
read(10, “15\t\t\t\tfr_CH.ISO8859-15\nfr_CH.utf”…, 1024) = 1024
read(10, “IE.ISO-8859-1\t\t\t\tga_IE.ISO8859-1”…, 1024) = 1024
read(10, “o88591\t\t\t\t\tgv_GB.ISO8859-1\ngv_GB”…, 1024) = 1024
read(10, “\thu_HU.ISO8859-2\nhu_HU.iso88592\t”…, 1024) = 1024
read(10, “\tit_IT.ISO8859-15\nit_IT.ISO-8859”…, 1024) = 1024
read(10, “IS\nja_JP.SJIS\t\t\t\t\tja_JP.SJIS\nja_”…, 1024) = 1024
read(10, “kw\t\t\t\t\t\tkw_GB.ISO8859-1\nkw_GB\t\t\t”…, 1024) = 1024
read(10, “9-13\nlv_LV.ISO_8859-13\t\t\t\tlv_LV.”…, 1024) = 1024
read(10, “859-1\nnb_NO.iso885915\t\t\t\tnb_NO.I”…, 1024) = 1024
read(10, “_NL.UTF-8\nnn\t\t\t\t\t\tnn_NO.ISO8859-”…, 1024) = 1024
read(10, “59-15\nno@nynorsk\t\t\t\t\tny_NO.ISO88”…, 1024) = 1024
read(10, “1\npt\t\t\t\t\t\tpt_PT.ISO8859-1\npt.ISO”…, 1024) = 1024
read(10, “ru_RU.ISO8859-5\nru_RU.koi8r\t\t\t\t\t”…, 1024) = 1024
read(10, “tenegro (now separate RS and ME)”…, 1024) = 1024
read(10, “\nsr_YU@cyrillic\t\t\t\t\tsr_RS.UTF-8\n”…, 1024) = 1024
read(10, “I.ISO8859-15\nsv_FI.UTF-8@euro\t\t\t”…, 1024) = 1024
read(10, “\t\ttn_ZA.ISO8859-15\ntn_ZA.iso8859”…, 1024) = 1024
read(10, “ROSOFT-CP1256\t\t\t\tur_PK.CP1256\nuz”…, 1024) = 1024
read(10, “\tyi_US.CP1255\nyi_US.MICROSOFT-CP”…, 1024) = 1024
read(10, “UTF-8\nZH_TW.UTF-8\t\t\t\t\tzh_TW.UTF-”…, 1024) = 1024
read(10, “\t\t\t\t\t\tet_EE.ISO8859-1\nenglish.is”…, 1024) = 1024
read(10, “\tro_RO.ISO8859-2\nrumanian\t\t\t\t\tro”…, 1024) = 1024
read(10, “rd is full locale name.\n#\n#\n\nPOS”…, 1024) = 1024
read(10, “59-6\nar_BH.iso88596:\t\t\t\t\tar_BH.I”…, 1024) = 1024
read(10, “SO8859-6\nar_LY.utf8:\t\t\t\t\tar_LY.U”…, 1024) = 1024
read(10, “\tar_YE.ISO8859-6\nar_YE.iso88596:”…, 1024) = 1024
read(10, “1\nbr_FR.iso88591:\t\t\t\t\tbr_FR.ISO8”…, 1024) = 1024
read(10, “\t\t\tca_ES.UTF-8\nca_ES.ISO-8859-15”…, 1024) = 1024
read(10, “8859-2:\t\t\t\tcs_CZ.ISO8859-2\ncs_C"…, 1024) = 1024
read(10, “:\t\t\t\t\tde_DE.ISO8859-15\nde_AT:\t\t\t”…, 1024) = 1024
read(10, “:\t\t\t\t\t\tde_DE.ISO8859-1\nde_DE@eur”…, 1024) = 1024
read(10, “\t\t\t\tee_EE.ISO8859-4\nee_EE.iso885”…, 1024) = 1024
read(10, “59-15\nen_DK.utf8:\t\t\t\t\ten_DK.UTF-”…, 1024) = 1024
read(10, “en_NZ.ISO8859-1\nen_NZ.ISO-8859-1”…, 1024) = 1024
read(10, “\ten_US.ISO8859-15\nen_US.ISO8859-”…, 1024) = 1024
read(10, “L:\t\t\t\t\t\tes_CL.ISO8859-1\nes_CL.is”…, 1024) = 1024
read(10, “ES.UTF-8\nes_ES.utf8:\t\t\t\t\tes_ES."…, 1024) = 1024
read(10, “\t\t\tes_PY.ISO8859-1\nes_PY.iso8859”…, 1024) = 1024
read(10, “t_EE.iso88594:\t\t\t\t\tet_EE.ISO8859”…, 1024) = 1024
read(10, “I.ISO-8859-15@euro:\t\t\t\tfi_FI.ISO”…, 1024) = 1024
read(10, “\t\t\tfr_CA.ISO8859-1\nfr_CA.iso8859”…, 1024) = 1024
read(10, “1\nfr_LU.iso885915:\t\t\t\tfr_LU.ISO8”…, 1024) = 1024
read(10, “O8859-1\ngl_ES.iso88591:\t\t\t\t\tgl_E”…, 1024) = 1024
read(10, “i_IN.ISCII-DEV\nHI_IN:\t\t\t\t\t\thi_IN”…, 1024) = 1024
read(10, “t_IT.ISO8859-15\nit.UTF-8:\t\t\t\t\tit”…, 1024) = 1024
read(10, “iw_IL.iso88598:\t\t\t\t\the_IL.ISO885”…, 1024) = 1024
read(10, “-8\nkm_KH.utf8:\t\t\t\t\tkm_KH.UTF-8\nk”…, 1024) = 1024
read(10, “lo_LA.IBM-CP1133\nlo_LA.mulelao1:”…, 1024) = 1024
read(10, “1:\t\t\t\tmk_MK.CP1251\nmk_MK.MICROSO”…, 1024) = 1024
read(10, “O8859-1\nnl_BE.iso885915:\t\t\t\tnl_B”…, 1024) = 1024
read(10, “59-1\nno_NO.iso88591:\t\t\t\t\tno_NO.I”…, 1024) = 1024
read(10, “\t\t\t\tor_IN.UTF-8\npa:\t\t\t\t\t\tpa_IN.U”…, 1024) = 1024
read(10, “1\npt_PT.88591:\t\t\t\t\tpt_PT.ISO8859”…, 1024) = 1024
read(10, “UA.microsoftcp1251:\t\t\t\tru_UA.CP1”…, 1024) = 1024
read(10, " sid_ET.UT"…, 1024) = 1024
read(10, “TF-8@latin\nsr_RS:\t\t\t\t\t\tsr_RS.UTF”…, 1024) = 1024
read(10, “SE.ISO-8859-1:\t\t\t\tsv_SE.ISO8859"…, 1024) = 1024
read(10, “599:\t\t\t\t\ttr_TR.ISO8859-9\ntr_TR.I”…, 1024) = 1024
read(10, “TF-8\nuz_UZ.UTF-8@cyrillic:\t\t\t\tuz”…, 1024) = 1024
read(10, "5\nzh_CN.EUC:\t\t\t\t\tzh_CN.eucCN\nzh”…, 1024) = 1024
read(10, “\t\t\tzu_ZA.ISO8859-1\nzu_ZA.iso8859”…, 1024) = 1024
read(10, “\t\t\ten_US.ISO8859-1\nestonian:\t\t\t\t”…, 1024) = 1024
read(10, “ISO8859-2\nrumanian:\t\t\t\t\tro_RO.IS”…, 1024) = 826
read(10, “”, 1024) = 0
close(10) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/locale.dir”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=40625, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 1024
read(10, “E.ISO8859-6\niso8859-6/XLC_LOCALE”…, 1024) = 1024
read(10, “DK.ISO8859-1\niso8859-15/XLC_LOC"…, 1024) = 1024
read(10, “OCALE\t\t\ten_GB.ISO8859-1\niso8859-”…, 1024) = 1024
read(10, “8859-1/XLC_LOCALE\t\t\tes_CR.ISO885”…, 1024) = 1024
read(10, "9-13\niso8859-15/XLC_LOCALE\t\t\tet”…, 1024) = 1024
read(10, “OCALE\t\t\tgd_GB.ISO8859-15\niso8859”…, 1024) = 1024
read(10, "OCALE\t\t\tkl_GL.ISO8859-15\nko/XLC”…, 1024) = 1024
read(10, “LC_LOCALE\t\t\tno_NO.ISO8859-15\niso”…, 1024) = 1024
read(10, " \t\tru_RU.CP1251\nkoi8-r/XLC_LOCAL"…, 1024) = 1024
read(10, “20\niso8859-1/XLC_LOCALE \t\t\ttl_PH”…, 1024) = 1024
read(10, “LOCALE\t\t\tzu_ZA.ISO8859-1\n# Note"…, 1024) = 1024
read(10, “s_IN.UTF-8\nen_US.UTF-8/XLC_LOCAL”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
read(10, “UTF-8/XLC_LOCALE\t\t\tes_EC.UTF-8\ne”…, 1024) = 1024
read(10, " gez_ER.UTF-8\nen_US.UTF-8/XLC”…, 1024) = 1024
read(10, “ALE\t\t\tku_TR.UTF-8\nen_US.UTF-8/XL”…, 1024) = 1024
read(10, “XLC_LOCALE\t\t\toc_FR.UTF-8\nen_US.U”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
close(10) = 0
access("/usr/share/X11/locale/C/XLC_LOCALE", R_OK) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/C/XLC_LOCALE”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=693, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 693
read(10, “”, 1024) = 0
close(10) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/locale.alias”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=82746, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 1024
read(10, “A.ISO-8859-6\t\t\t\tar_AA.ISO8859-6\n”…, 1024) = 1024
read(10, “.ISO-8859-6\t\t\t\tar_LB.ISO8859-6\na”…, 1024) = 1024
read(10, “8859-6\nar_TN.utf8\t\t\t\t\tar_TN.UTF-”…, 1024) = 1024
read(10, “UTF-8\nbo_IN.utf8\t\t\t\t\tbo_IN.UTF-8”…, 1024) = 1024
read(10, “9-1\nca_ES.iso885915\t\t\t\tca_ES.ISO”…, 1024) = 1024
read(10, “s_CZ.ISO8859-2\ncs_CZ.ISO_8859-2\t”…, 1024) = 1024
read(10, “de_DE.ISO8859-15\nde_AT\t\t\t\t\t\tde_A”…, 1024) = 1024
read(10, “\t\t\tde_DE.ISO8859-15\nde_DE.88591\t”…, 1024) = 1024
read(10, “l_GR.ISO8859-7\nel_GR\t\t\t\t\t\tel_GR.”…, 1024) = 1024
read(10, “591\t\t\t\t\ten_GB.ISO8859-1\nen_GB.88”…, 1024) = 1024
read(10, “.UTF-8\nen_PH.iso88591\t\t\t\t\ten_PH.”…, 1024) = 1024
read(10, “\t\ten_ZA.ISO8859-1\nen_ZA.88591.en”…, 1024) = 1024
read(10, “O.ISO-8859-1\t\t\t\tes_CO.ISO8859-1\n”…, 1024) = 1024
read(10, “859-1\nes_HN.ISO-8859-1\t\t\t\tes_HN.”…, 1024) = 1024
read(10, “\nes_SV.iso885915\t\t\t\tes_SV.ISO885”…, 1024) = 1024
read(10, “\t\t\t\teu_ES.ISO8859-1\neu_ES.iso885”…, 1024) = 1024
read(10, “\t\t\tfo_FO.ISO8859-15\nfo_FO.utf8\t\t”…, 1024) = 1024
read(10, “15\t\t\t\tfr_CH.ISO8859-15\nfr_CH.utf”…, 1024) = 1024
read(10, “IE.ISO-8859-1\t\t\t\tga_IE.ISO8859-1”…, 1024) = 1024
read(10, “o88591\t\t\t\t\tgv_GB.ISO8859-1\ngv_GB”…, 1024) = 1024
read(10, “\thu_HU.ISO8859-2\nhu_HU.iso88592\t”…, 1024) = 1024
read(10, “\tit_IT.ISO8859-15\nit_IT.ISO-8859”…, 1024) = 1024
read(10, "IS\nja_JP.SJIS\t\t\t\t\tja_JP.SJIS\nja”…, 1024) = 1024
read(10, “kw\t\t\t\t\t\tkw_GB.ISO8859-1\nkw_GB\t\t\t”…, 1024) = 1024
read(10, “9-13\nlv_LV.ISO_8859-13\t\t\t\tlv_LV.”…, 1024) = 1024
read(10, “859-1\nnb_NO.iso885915\t\t\t\tnb_NO.I”…, 1024) = 1024
read(10, “_NL.UTF-8\nnn\t\t\t\t\t\tnn_NO.ISO8859-”…, 1024) = 1024
read(10, “59-15\nno@nynorsk\t\t\t\t\tny_NO.ISO88”…, 1024) = 1024
read(10, “1\npt\t\t\t\t\t\tpt_PT.ISO8859-1\npt.ISO”…, 1024) = 1024
read(10, “ru_RU.ISO8859-5\nru_RU.koi8r\t\t\t\t\t”…, 1024) = 1024
read(10, “tenegro (now separate RS and ME)”…, 1024) = 1024
read(10, “\nsr_YU@cyrillic\t\t\t\t\tsr_RS.UTF-8\n”…, 1024) = 1024
read(10, “I.ISO8859-15\nsv_FI.UTF-8@euro\t\t\t”…, 1024) = 1024
read(10, “\t\ttn_ZA.ISO8859-15\ntn_ZA.iso8859”…, 1024) = 1024
read(10, “ROSOFT-CP1256\t\t\t\tur_PK.CP1256\nuz”…, 1024) = 1024
read(10, “\tyi_US.CP1255\nyi_US.MICROSOFT-CP”…, 1024) = 1024
read(10, “UTF-8\nZH_TW.UTF-8\t\t\t\t\tzh_TW.UTF-”…, 1024) = 1024
read(10, “\t\t\t\t\t\tet_EE.ISO8859-1\nenglish.is”…, 1024) = 1024
read(10, “\tro_RO.ISO8859-2\nrumanian\t\t\t\t\tro”…, 1024) = 1024
read(10, “rd is full locale name.\n#\n#\n\nPOS”…, 1024) = 1024
read(10, “59-6\nar_BH.iso88596:\t\t\t\t\tar_BH.I”…, 1024) = 1024
read(10, “SO8859-6\nar_LY.utf8:\t\t\t\t\tar_LY.U”…, 1024) = 1024
read(10, “\tar_YE.ISO8859-6\nar_YE.iso88596:”…, 1024) = 1024
read(10, “1\nbr_FR.iso88591:\t\t\t\t\tbr_FR.ISO8”…, 1024) = 1024
read(10, “\t\t\tca_ES.UTF-8\nca_ES.ISO-8859-15”…, 1024) = 1024
read(10, “_8859-2:\t\t\t\tcs_CZ.ISO8859-2\ncs_C”…, 1024) = 1024
read(10, “:\t\t\t\t\tde_DE.ISO8859-15\nde_AT:\t\t\t”…, 1024) = 1024
read(10, “:\t\t\t\t\t\tde_DE.ISO8859-1\nde_DE@eur”…, 1024) = 1024
read(10, “\t\t\t\tee_EE.ISO8859-4\nee_EE.iso885”…, 1024) = 1024
read(10, “59-15\nen_DK.utf8:\t\t\t\t\ten_DK.UTF-”…, 1024) = 1024
read(10, “en_NZ.ISO8859-1\nen_NZ.ISO-8859-1”…, 1024) = 1024
read(10, “\ten_US.ISO8859-15\nen_US.ISO8859-”…, 1024) = 1024
read(10, “L:\t\t\t\t\t\tes_CL.ISO8859-1\nes_CL.is”…, 1024) = 1024
read(10, “ES.UTF-8\nes_ES.utf8:\t\t\t\t\tes_ES."…, 1024) = 1024
read(10, “\t\t\tes_PY.ISO8859-1\nes_PY.iso8859”…, 1024) = 1024
read(10, “t_EE.iso88594:\t\t\t\t\tet_EE.ISO8859”…, 1024) = 1024
read(10, “I.ISO-8859-15@euro:\t\t\t\tfi_FI.ISO”…, 1024) = 1024
read(10, “\t\t\tfr_CA.ISO8859-1\nfr_CA.iso8859”…, 1024) = 1024
read(10, “1\nfr_LU.iso885915:\t\t\t\tfr_LU.ISO8”…, 1024) = 1024
read(10, “O8859-1\ngl_ES.iso88591:\t\t\t\t\tgl_E”…, 1024) = 1024
read(10, “i_IN.ISCII-DEV\nHI_IN:\t\t\t\t\t\thi_IN”…, 1024) = 1024
read(10, “t_IT.ISO8859-15\nit.UTF-8:\t\t\t\t\tit”…, 1024) = 1024
read(10, “iw_IL.iso88598:\t\t\t\t\the_IL.ISO885”…, 1024) = 1024
read(10, “-8\nkm_KH.utf8:\t\t\t\t\tkm_KH.UTF-8\nk”…, 1024) = 1024
read(10, “lo_LA.IBM-CP1133\nlo_LA.mulelao1:”…, 1024) = 1024
read(10, “1:\t\t\t\tmk_MK.CP1251\nmk_MK.MICROSO”…, 1024) = 1024
read(10, “O8859-1\nnl_BE.iso885915:\t\t\t\tnl_B”…, 1024) = 1024
read(10, “59-1\nno_NO.iso88591:\t\t\t\t\tno_NO.I”…, 1024) = 1024
read(10, “\t\t\t\tor_IN.UTF-8\npa:\t\t\t\t\t\tpa_IN.U”…, 1024) = 1024
read(10, “1\npt_PT.88591:\t\t\t\t\tpt_PT.ISO8859”…, 1024) = 1024
read(10, “UA.microsoftcp1251:\t\t\t\tru_UA.CP1”…, 1024) = 1024
read(10, " sid_ET.UT"…, 1024) = 1024
read(10, “TF-8@latin\nsr_RS:\t\t\t\t\t\tsr_RS.UTF”…, 1024) = 1024
read(10, “SE.ISO-8859-1:\t\t\t\tsv_SE.ISO8859"…, 1024) = 1024
read(10, “599:\t\t\t\t\ttr_TR.ISO8859-9\ntr_TR.I”…, 1024) = 1024
read(10, “TF-8\nuz_UZ.UTF-8@cyrillic:\t\t\t\tuz”…, 1024) = 1024
read(10, "5\nzh_CN.EUC:\t\t\t\t\tzh_CN.eucCN\nzh”…, 1024) = 1024
read(10, “\t\t\tzu_ZA.ISO8859-1\nzu_ZA.iso8859”…, 1024) = 1024
read(10, “\t\t\ten_US.ISO8859-1\nestonian:\t\t\t\t”…, 1024) = 1024
read(10, “ISO8859-2\nrumanian:\t\t\t\t\tro_RO.IS”…, 1024) = 826
read(10, “”, 1024) = 0
close(10) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/locale.dir”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=40625, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 1024
read(10, “E.ISO8859-6\niso8859-6/XLC_LOCALE”…, 1024) = 1024
read(10, “DK.ISO8859-1\niso8859-15/XLC_LOC"…, 1024) = 1024
read(10, “OCALE\t\t\ten_GB.ISO8859-1\niso8859-”…, 1024) = 1024
read(10, “8859-1/XLC_LOCALE\t\t\tes_CR.ISO885”…, 1024) = 1024
read(10, "9-13\niso8859-15/XLC_LOCALE\t\t\tet”…, 1024) = 1024
read(10, “OCALE\t\t\tgd_GB.ISO8859-15\niso8859”…, 1024) = 1024
read(10, "OCALE\t\t\tkl_GL.ISO8859-15\nko/XLC”…, 1024) = 1024
read(10, “LC_LOCALE\t\t\tno_NO.ISO8859-15\niso”…, 1024) = 1024
read(10, " \t\tru_RU.CP1251\nkoi8-r/XLC_LOCAL"…, 1024) = 1024
read(10, “20\niso8859-1/XLC_LOCALE \t\t\ttl_PH”…, 1024) = 1024
read(10, “LOCALE\t\t\tzu_ZA.ISO8859-1\n# Note"…, 1024) = 1024
read(10, “s_IN.UTF-8\nen_US.UTF-8/XLC_LOCAL”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
read(10, “UTF-8/XLC_LOCALE\t\t\tes_EC.UTF-8\ne”…, 1024) = 1024
read(10, " gez_ER.UTF-8\nen_US.UTF-8/XLC”…, 1024) = 1024
read(10, “ALE\t\t\tku_TR.UTF-8\nen_US.UTF-8/XL”…, 1024) = 1024
read(10, “XLC_LOCALE\t\t\toc_FR.UTF-8\nen_US.U”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
read(10, “.UTF-8\nen_US.UTF-8/XLC_LOCALE\t\t\t”…, 1024) = 1024
close(10) = 0
access("/usr/share/X11/locale/C/XLC_LOCALE", R_OK) = 0
openat(AT_FDCWD, “/usr/share/X11/locale/C/XLC_LOCALE”, O_RDONLY) = 10
fstat(10, {st_mode=S_IFREG|0644, st_size=693, …}) = 0
read(10, “\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n”…, 1024) = 693
read(10, “”, 1024) = 0
close(10) = 0
uname({sysname=“Linux”, nodename=“beluga2.int.ets1.calculquebec.ca”, …}) = 0
openat(AT_FDCWD, “/home/hayabusa/.Xdefaults-beluga2.int.ets1.calculquebec.ca”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/home/hayabusa/.icons/Yaru/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/home/hayabusa/.icons/Yaru/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/icons/Yaru/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/icons/Yaru/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/pixmaps/Yaru/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/pixmaps/Yaru/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/home/hayabusa/.icons/default/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/home/hayabusa/.icons/default/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/icons/default/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/icons/default/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/pixmaps/default/cursors/left_ptr”, O_RDONLY) = -1 ENOENT (No such file or directory)
openat(AT_FDCWD, “/usr/share/pixmaps/default/index.theme”, O_RDONLY) = -1 ENOENT (No such file or directory)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\22\0\n\0\2\0\0\3]\1\0\0\4\0\0\0 \0\4\0\4\0\0\0[\1\0\0^\1\0\0"…, iov_len=380}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 380
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\260\0\2\0\0\3\366\2\0\0\305\235m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 132
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\22\0\17\0\2\0\0\3#\0\0\0#\0\0\0 \0\4\0\t\0\0\0C\0\0\0\1\0\0\0"…, iov_len=84}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 84
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\266\0\2\0\0\3#\0\0\0\322\235m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 100
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\22\0\17\0\2\0\0\3#\0\0\0#\0\0\0 \0\4\0\t\0\0\0C\0\0\0\1\0\0\0"…, iov_len=208}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 208
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\270\0\2\0\0\3#\0\0\0\336\235m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 128
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\23\0\3\0\2\0\0\3\252\1\0\0\24\0\6\0\2\0\0\3k\1\0\0\4\0\0\0\0\0\0\0"…, iov_len=36}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 36
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1\0\275\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
ioctl(16, FIONREAD, [0]) = 0
close(16) = 0
ioctl(14, FIONREAD, [0]) = 0
close(14) = 0
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\22\0\10\0\2\0\0\3k\1\0\0\4\0\0\0 \0\0\3\2\0\0\0l\1\0\0\357\2\0\0"…, iov_len=84}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 84
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=2, tv_usec=999740}) = 1 (in [5], left {tv_sec=2, tv_usec=999738})
read(5, “\0”, 16) = 1
read(5, 0x7fff7060d190, 16) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=2, tv_usec=999608}) = 1 (in [9], left {tv_sec=2, tv_usec=983855})
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\276\0\2\0\0\3k\1\0\0\371\235m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 64
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3k\1\0\0\4\0\0\0\0\0\0\0\0\4\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\301\0\2\0\0\3\313\1\0\0\373\235m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 64
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\301\0\2\0\0\3\337\1\0\0\4\236m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 224
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\301\0\2\0\0\3\251\1\0\0\7\236m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 492
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3k\1\0\0\4\0\0\0\0\0\0\0\0\4\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1 \303\0\3\0\0\0\4\0\0\0\0\0\0\0\3\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 44
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="+\0\1\0", iov_len=4}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 4
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1\1\304\0\0\0\0\0\17\0\340\2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3\251\1\0\0\251\1\0\0\0\0\0\0\2\0\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1 \305\0\2\0\0\0\251\1\0\0\0\0\0\0\2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 40
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3k\1\0\0\4\0\0\0\0\0\0\0\0\4\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1 \306\0\3\0\0\0\4\0\0\0\0\0\0\0\3\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 44
select(21, [5 9 20], [], [], {tv_sec=0, tv_usec=0}) = 0 (Timeout)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3k\1\0\0\4\0\0\0\0\0\0\0\0\4\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1 \307\0\3\0\0\0\4\0\0\0\0\0\0\0\3\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 44
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
mmap(NULL, 864256, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2b564f228000
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=“H\0020\377\2\0\0\3\7\0\0\3=\2r\0\0\0\0\0\0\30\0\0”, iov_len=24}, {iov_base="\232\232\232\377\232\232\232\377\232\232\232\377\232\232\232\377\232\232\232\377\232\232\232\377\232\232\232\377\232\232\232\377"…, iov_len=261288}, {iov_base="", iov_len=0}], 3) = 261312
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=“H\0020\377\2\0\0\3\7\0\0\3=\2r\0\0\0r\0\0\30\0\0”, iov_len=24}, {iov_base="\232\232\232\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377"…, iov_len=261288}, {iov_base="", iov_len=0}], 3) = 261312
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=“H\0020\377\2\0\0\3\7\0\0\3=\2r\0\0\0\344\0\0\30\0\0”, iov_len=24}, {iov_base="\232\232\232\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377"…, iov_len=261288}, {iov_base="", iov_len=0}], 3) = 261312
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=“H\2 L\2\0\0\3\7\0\0\3=\2”\0\0\0V\1\0\30\0\0", iov_len=24}, {iov_base="\232\232\232\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377\377"…, iov_len=77928}, {iov_base="", iov_len=0}], 3) = 77952
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=2, tv_usec=898078}QStandardPaths: error creating runtime directory /run/user/3115426 (No such file or directory)
) = 0 (Timeout)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\n\2\2\0\2\0\0\3\31\0\v\0\304\7\0\0\0\0\30\0\22\0\0\0\304\7\0\0\2\0\0\3"…, iov_len=52}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 52
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=26, tv_usec=906420}) = 1 (in [9], left {tv_sec=26, tv_usec=880003})
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\22\0\314\0\2\0\0\3\2\0\0\3\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 192
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\24\0\6\0\2\0\0\3\251\1\0\0\251\1\0\0\0\0\0\0\2\0\0\0", iov_len=24}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 24
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1 \316\0\2\0\0\0\251\1\0\0\0\0\0\0\2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 40
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base="\23\0\3\0\2\0\0\3\251\1\0\0", iov_len=12}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 12
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=26, tv_usec=863445}) = 1 (in [9], left {tv_sec=26, tv_usec=836072})
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\317\0\2\0\0\3\251\1\0\0\332\251m\0\1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=26, tv_usec=835938}) = 1 (in [9], left {tv_sec=24, tv_usec=452303})
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\317\0\304\7\0\0\326\1\0\08\263m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 64
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=24, tv_usec=452113}) = 1 (in [9], left {tv_sec=24, tv_usec=444994})
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\317\0\304\7\0\0\300\1\0\0:\263m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 96
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
recvmsg(9, {msg_namelen=0}, 0) = -1 EAGAIN (Resource temporarily unavailable)
select(21, [5 9 20], [], [], {tv_sec=24, tv_usec=444870}QThread::start: Thread creation error (Resource temporarily unavailable)
QThread::start: Thread creation error (Resource temporarily unavailable)
QThread::start: Thread creation error (Resource temporarily unavailable)

) = ? ERESTARTNOHAND (To be restarted if no handler)
— SIGCHLD {si_signo=SIGCHLD, si_code=CLD_KILLED, si_pid=52872, si_uid=3115426, si_status=SIGABRT, si_utime=526, si_stime=261} —
write(8, “\0”, 1) = 1
rt_sigreturn({mask=[]}) = -1 EINTR (Interrupted system call)
select(21, [5 9 20], [], [], {tv_sec=21, tv_usec=257509}) = 1 (in [20], left {tv_sec=21, tv_usec=257507})
read(20, “\0”, 1) = 1
wait4(52872, [{WIFSIGNALED(s) && WTERMSIG(s) == SIGABRT}], WNOHANG, NULL) = 52872
ioctl(-1, FIONREAD, 0x7fff7060cc6c) = -1 EBADF (Bad file descriptor)
ioctl(-1, FIONREAD, 0x7fff7060cc6c) = -1 EBADF (Bad file descriptor)
close(11) = 0
close(21) = 0
close(20) = 0
write(2, “error: “, 7error: ) = 7
write(2, “[/Slicer/bin/SlicerApp-real] exi”…, 66[/Slicer/bin/SlicerApp-real] exit abnormally - Report the problem.) = 66
write(2, “\n”, 1
) = 1
write(6, “\0”, 1) = 1
munmap(0x2b564f228000, 864256) = 0
munmap(0x2b564ef42000, 864256) = 0
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=”\213\7\2\0\3\0\0\3\22\0\n\0\2\0\0\3\366\2\0\0\366\2\0\0\10\7\0\0\20\0\0\0”…, iov_len=84}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 84
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\321\0\2\0\0\3\366\2\0\0\366\277m\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 224
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\34\0\322\0\2\0\0\3\372\1\0\0\366\277m\0\1\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"…, iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 512
poll([{fd=9, events=POLLIN|POLLOUT}], 1, -1) = 1 ([{fd=9, revents=POLLOUT}])
writev(9, [{iov_base=“O\7\2\0\1\0\0\3<\0\2\0\0\0\0\3.\2\2\0\5\0\0\3+\7\1\0”, iov_len=28}, {iov_base=NULL, iov_len=0}, {iov_base="", iov_len=0}], 3) = 28
poll([{fd=9, events=POLLIN}], 1, -1) = 1 ([{fd=9, revents=POLLIN}])
recvmsg(9, {msg_name=NULL, msg_namelen=0, msg_iov=[{iov_base="\1\1\332\0\0\0\0\0\17\0\340\2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0", iov_len=4096}], msg_iovlen=1, msg_controllen=0, msg_flags=0}, 0) = 32
shutdown(9, SHUT_RDWR) = 0
close(9) = 0
openat(AT_FDCWD, “/sys/devices/system/cpu/online”, O_RDONLY|O_CLOEXEC) = 9
read(9, “0-39\n”, 8192) = 5
close(9) = 0
close(5) = 0
close(6) = 0
write(8, “@”, 1) = 1
close(8) = 0
futex(0x1b5b070, FUTEX_WAIT_PRIVATE, 0, NULL) = 0
futex(0x1b5b020, FUTEX_WAKE_PRIVATE, 1) = 0
close(7) = 0
rt_sigaction(SIGCHLD, NULL, {sa_handler=0xa7ff60, sa_mask=[], sa_flags=SA_RESTORER|SA_SIGINFO|SA_NOCLDSTOP, sa_restorer=0x2b564e3c7730}, 8) = 0
rt_sigaction(SIGCHLD, {sa_handler=SIG_DFL, sa_mask=[], sa_flags=SA_RESTORER, sa_restorer=0x2b564e3c7730}, NULL, 8) = 0
exit_group(1) = ?
+++ exited with 1 +++

10

And using gdb on /bin/SlicerApp-real
${SINGULARITY_ROOTFS}/Slicer/Slicer --launch gdb ${SINGULARITY_ROOTFS}/Slicer/bin/SlicerApp-real

11

Traceback (most recent call last):
File “/Slicer/bin/…/lib/Python/lib/python3.6/site.py”, line 553, in
main()
File “/Slicer/bin/…/lib/Python/lib/python3.6/site.py”, line 539, in main
known_paths = addusersitepackages(known_paths)
File “/Slicer/bin/…/lib/Python/lib/python3.6/site.py”, line 282, in addusersitepackages
user_site = getusersitepackages()
File “/Slicer/bin/…/lib/Python/lib/python3.6/site.py”, line 258, in getusersitepackages
user_base = getuserbase() # this will also set USER_BASE
File “/Slicer/bin/…/lib/Python/lib/python3.6/site.py”, line 248, in getuserbase
USER_BASE = get_config_var(‘userbase’)
File “/Slicer/lib/Python/lib/python3.6/sysconfig.py”, line 601, in get_config_var
return get_config_vars().get(name)
File “/Slicer/lib/Python/lib/python3.6/sysconfig.py”, line 550, in get_config_vars
_init_posix(_CONFIG_VARS)
File “/Slicer/lib/Python/lib/python3.6/sysconfig.py”, line 421, in _init_posix
_temp = import(name, globals(), locals(), [‘build_time_vars’], 0)
ModuleNotFoundError: No module named ‘_sysconfigdata__linux_x86_64-linux-gnu’

12

ModuleNotFoundError: No module named ‘_sysconfigdata__linux_x86_64-linux-gnu’

I have no clue…

13

This GDB problem is due to GDB depending on Python and GDB developers thinking that only system Python exists. See workaround here: C++ debugging on GNU/Linux systems — 3D Slicer documentation