VERSION=“16.04.3 LTS (Xenial Xerus)”
PRETTY_NAME=“Ubuntu 16.04.3 LTS”
Slicer nightly (updated as of 2018-08-20)
For a subset of subjects (all subjects from a single site), the mask generated includes the spinal cord. I am concerned that this may be a problem when subjects across all sites are being registered.
Is it a problem to have the spinal cord included in a subset of tractography results? If so, how do I mask it out?
Here is the code I am running: https://github.com/sabashahab/STOPPD_DTI/blob/master/SlicerTractography_edit.sh