I have been doing segmentation for EAT and Ventricles. I use manual segmentation by hand. Whenever I look at the 3D Model generated by 3D Slicer, I see that there are gaps between slices even if I segmented every slice… I need to generate 3D Volumes based on my segmentation.
I also figured that whenever I drag my .nrrd and .seg.nrrd files into 3D Slicer, my segmentation seems less than what I make. If the segmentation is thin, 3d Slicer assumes that there is nothing there,I am guessing. Is there anything I can do about it? I would appreciate if any of you help me.
You can find the pictures at the atachment,
Your help is highly appreciated in this matter.