The shape will be changed when I turn an array to volume

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1

I use the script slicer.util.arrayFromVolume(volumeNode) get an array.

Then I use the script slicer.util.addVolumeFromArray(array), the volume’s shape is changed as is shown in the picture.

Why? How can I get the original volume from the array.

image
image1204×847 200 KB

2

You can specify the ijkToRAS transform from the source volume, something like this:

ijkToRAS = vtk.vtkMatrix4x4()
volumeNode.GetIJKToRASMatrix(ijkToRAS)
segArray = numpy.stack(segmentationArrays)
segNode = slicer.util.addVolumeFromArray(segArray, ijkToRAS=ijkToRAS, name="Segmentation")
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