Operating system: Windows 10
Slicer version: 5.8.1
Expected behavior: Load NRRD file as volume
Actual behavior: Error loading data. Does not recognize NRRD file.
We use a X-Ray CT from a local startup called Lumafield. We lease a CT machine from them and their web-based software automates the reconstruction for us, along with other analysis features. One of their features is the ability to export scans as NRRD files. However, I am u nable to load any of the NRRD files into Slicer (~85MB).
I’ve attached the error log and the header info from the NRRD file below:
==== Error Log ======
CanReadFile failed: [nrrd] nrrdLoad: trouble reading “C:/Users/MichaelChon/Downloads/2dee31ef-f170-4b82-ac12-e58663efae71.nrrd”
[nrrd] nrrdRead: trouble
[nrrd] _nrrdRead: trouble reading NRRD file
[nrrd] _nrrdFormatNRRD_read: trouble parsing space directions info |(0,0,1) (0,1,0) (1,0,0)|
[nrrd] _nrrdReadNrrdParse_space_directions: don’t yet have a valid space dimension
CanReadFile failed: [nrrd] nrrdLoad: trouble reading “C:/Users/MichaelChon/Downloads/2dee31ef-f170-4b82-ac12-e58663efae71.nrrd”
[nrrd] nrrdRead: trouble
[nrrd] _nrrdRead: trouble reading NRRD file
[nrrd] _nrrdFormatNRRD_read: trouble parsing space directions info |(0,0,1) (0,1,0) (1,0,0)|
[nrrd] _nrrdReadNrrdParse_space_directions: don’t yet have a valid space dimension
vtkITKArchetypeImageSeriesReader::ExecuteInformation: Cannot open C:/Users/MichaelChon/Downloads/2dee31ef-f170-4b82-ac12-e58663efae71.nrrd. ITK exception info: error in unknown: Could not create IO object for reading file C:/Users/MichaelChon/Downloads/2dee31ef-f170-4b82-ac12-e58663efae71.nrrd
Tried to create one of the following:
BMPImageIO
BioRadImageIO
DCMTKImageIO
GDCMImageIO
GiplImageIO
JPEGImageIO
LSMImageIO
MGHImageIO
MINCImageIO
MRCImageIO
MetaImageIO
NiftiImageIO
NrrdImageIO
PNGImageIO
ScancoImageIO
StimulateImageIO
TIFFImageIO
VTKImageIO
MRMLIDImageIO
You probably failed to set a file suffix, or
set the suffix to an unsupported type.
Algorithm vtkITKArchetypeDiffusionTensorImageReaderFile (000001C338AB2030) returned failure for request: vtkInformation (000001C347E2E8B0)
Debug: Off
Modified Time: 218680
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
FORWARD_DIRECTION: 0
ALGORITHM_AFTER_FORWARD: 1
CanReadFile failed: [nrrd] nrrdLoad: trouble reading “C:/Users/MichaelChon/Downloads/2dee31ef-f170-4b82-ac12-e58663efae71.nrrd”
[nrrd] nrrdRead: trouble
[nrrd] _nrrdRead: trouble reading NRRD file
[nrrd] _nrrdFormatNRRD_read: trouble parsing space directions info |(0,0,1) (0,1,0) (1,0,0)|
[nrrd] _nrrdReadNrrdParse_space_directions: don’t yet have a valid space dimension
===== NRRD Header ======
NRRD0005
type: uint8
dimension: 3
sizes: 367 355 764
endian: little
encoding: gzip
space directions: (0,0,1) (0,1,0) (1,0,0)
space origin: (0,0,0)
old min: 0.0
old max: 0.09155961871147156