I’m new using 3D Slicer. I’m currently working with MRI in order to segment it and create a socket. I’m working with datasets from Standford (mridata.org) wich has all their MRI in H5 format.
When I upload them, it fails and says it “H5Gopen2 failed”.
How can I fix it?
You will need to reconstruct this data into images. This will generate images in BART format as described here. The format has a simple text header (.hdr) in one file and the 64-bit float (double precision) image data in another file (.cfl). I would suggest using your favorite scripting language to generate a NRRD header based on the .hdr file that you can view with Slicer.
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