Operating system: Win 10
Slicer version: 4.10
I’m a true imaging newbie here. I have roughly 260 patients with MRIs of brain tumors. I’m trying to obtain high quality jpeg files of 3 slices containing the largest amount of tumor. Since this is obviously, quite a bit of work. What is the most efficient way for me to do this?
My current worfklow is loading all the patients scans at once in the import DICOM. and then using the screencapture module to find the slice containing the largest section and use the screencapture to screenshot the 3 slices (1 above it and 1 below it too). Is there a more efficient way of doing this? Perhaps segment the tumor out from each one first and then use some built in functions to choose largest slice?
Any help would be appreciated! Thank you!