Manjaro here (from AUR, so I asume the same for all pacman based linux)
:: 1 Packages to upgrade.
1 aur/3dslicer-nightly-bin 4.13.0.r20220113-1 -> 20220501.071714-1
==> Packages to exclude: (eg: "1 2 3", "1-3", "^4" or repo name)
==>
:: Checking for conflicts...
:: Checking for inner conflicts...
[Aur:1] 3dslicer-nightly-bin-20220501.071714-1
1 3dslicer-nightly-bin (Installed) (Build Files Exist)
==> Packages to cleanBuild?
==> [N]one [A]ll [Ab]ort [I]nstalled [No]tInstalled or (1 2 3, 1-3, ^4)
==>
:: PKGBUILD up to date, Skipping (1/0): 3dslicer-nightly-bin
1 3dslicer-nightly-bin (Installed) (Build Files Exist)
==> Diffs to show?
==> [N]one [A]ll [Ab]ort [I]nstalled [No]tInstalled or (1 2 3, 1-3, ^4)
==>
:: (1/1) Parsing SRCINFO: 3dslicer-nightly-bin
==> Making package: 3dslicer-nightly-bin 20220501.071714-1 (lun 02 may 2022 14:09:59)
==> Retrieving sources...
-> Found 3dslicer-20220501.071714.tar.gz
-> Found 3dslicer.svg
==> Validating source files with sha512sums...
3dslicer-20220501.071714.tar.gz ... FAILED
3dslicer.svg ... Passed
==> ERROR: One or more files did not pass the validity check!
-> error downloading sources: 3dslicer-nightly-bin
context: exit status 1
==> Making package: 3dslicer-nightly-bin 20220501.071714-1 (lun 02 may 2022 14:10:04)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
-> Found 3dslicer-20220501.071714.tar.gz
-> Found 3dslicer.svg
==> Validating source files with sha512sums...
3dslicer-20220501.071714.tar.gz ... FAILED
3dslicer.svg ... Passed
==> ERROR: One or more files did not pass the validity check!
-> error making: 3dslicer-nightly-bin
so searching in aur
pamac search 3dslicer
3dslicer-nightly-bin 20220501.071714-1 AUR
A free, open source and multi-platform software package widely used for medical, biomedical, and related imaging
research (nightly build)
3dslicer-nightly 4.11.0_2019_03_06-1 AUR
A free, open source software package for image analysis and scientific visualization.
3dslicer-bin [Installed] 5.0.1-1 AUR
A free, open source and multi-platform software package widely used for medical, biomedical, and related imaging
research
3dslicer 5.0.1-1 AUR
A free, open source and multi-platform software package widely used for medical, biomedical, and related imaging
research
Please, just enable developper mode and run the tests. they are automatic, so you just need to report if something goes wrong. Just be sure to report the specific Slicer version and how did you installed it.
3dslicer fails to build
3dslicer-bin installs 4.11
3dslicer-nightly installs 4.11
from archlinuxcn:
3dslicer installs 5.0.1 but basic stuffs are not working
3dslicer-bin installs 5.0.1 but basic stuffs are not working
3dslicer-nightly-bin installs 5.0.0 and it is working fine
What and where are these tests? I just built 5.1.0-2022-05-04 r30818 / 68a506f on Arch,which is working seamlessly in my workflow. If there are some standardized tests available, I’ll be happy to contribute.
Finally do the tests and report any error. The module uses extensively the Slicer API, so anything wrong shall be reported in the specific section in the test output.
If everything is ok you will have in the python interpreter the following
***** vtkmrmlutils Module Testing *****
DICOM test data dir: /home/user/Documents/Slicer_Ext/opendose3d/OpenDose3D/Resources/DICOM/A_Cycle3-6848MBq-9h57
Successfully loaded patient 599 with StudyInstanceUID: 1.2.752.37.5.626934496.20171125.26473.4.1934 and SeriesInstanceUID: 1.3.6.1.4.1.33868.20191002120418.51247
Test isDICOM_false_positive started!
Test isDICOM_false_positive passed!
Test isDICOM_true_positive started!
Could not load dicom files from database
Reload and Test failed.
Traceback (most recent call last):
File "/home/user/bin/Slicer_Ext/opendose3d/OpenDose3D/Logic/testbuilder.py", line 84, in setupDICOM
_ = DICOMUtils.loadPatientByName(dicomValues.patientName)
File "/home/user/programs/Slicer/lib/Slicer-5.1/qt-scripted-modules/DICOMLib/DICOMUtils.py", line 104, in loadPatientByName
raise OSError('Patient not found by name %s' % patientName)
OSError: Patient not found by name Patient1^Cycle3
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/user/programs/Slicer/bin/Python/slicer/ScriptedLoadableModule.py", line 216, in onReloadAndTest
test(msec=int(slicer.app.userSettings().value("Developer/SelfTestDisplayMessageDelay")), **kwargs)
File "/home/user/bin/Slicer_Ext/opendose3d/OpenDose3D/OpenDose3D.py", line 107, in runTest
testCase.runTest(**kwargs)
File "/home/user/bin/Slicer_Ext/opendose3d/OpenDose3D/Logic/vtkmrmlutilsTest.py", line 49, in runTest
self.isDICOM_true_positive()
File "/home/user/bin/Slicer_Ext/opendose3d/OpenDose3D/Logic/vtkmrmlutilsTest.py", line 106, in isDICOM_true_positive
itemIDs = setupDICOM()
File "/home/user/bin/Slicer_Ext/opendose3d/OpenDose3D/Logic/testbuilder.py", line 87, in setupDICOM
raise Error('Unable to load series from database')
Logic.errors.Error
Please note it’s self-built Slicer without any customization.
Slicer is built from source (not from PKGBUILD), packaged, then unpacked in a usual location. OpenDose3D is cloned from gitlab, and loaded in Slicer with –additional-module-paths pointing to the OpenDose3D/ directory. Nothing exotic in here.