What I would specifically like to do is to get the 2D segments from specific slices from two different segmentations onto the same binary label map. (let’s say two slices from the axial direction).
Using those two specific slices, I want to automate the “fill between slices” widget in segment editor to create a smooth volume (which I have figured out already).
The intent of this would essentially be to make a segmentation look like one complete volume then two separate ones for a simulation.
I was wondering if anyone had any idea of how to do the first step using python code?