Perform "threshold" and "fill between slices" directly in python

Support
1

Hi, I have a binary image where slices are already labeled, and want to generate a volume by interpolating between slices. I was able to do this easily in the 3D-slicer GUI by performing 1) a threshold segmentation and then 2) a fill between slices operation. However I wonder if it is possible to perform these operations directly in python without using the GUI?
Thanks,
Fredrik

2

All Slicer features are available to be used without GUI, from Python scripting. See many examples of automating segmentation using Python script here: https://www.slicer.org/wiki/Documentation/Nightly/ScriptRepository#How_to_run_segment_editor_effects_from_a_script

3

Great! Thanks a lot for the help!