Firstly, I am sorry if this is a naive question.
I want to create a 3-Dimensional Time Lapse of 3D volumes with label maps overlaid at each time point.
I have tried the following:
I have a 4D (x,y,z,n frames) matrix that I converted into a .nrrd file. I can sucessfully load it into Slicer as a sequence and display a 3D+time movie for the n=50 frames
I have n=50 3D volumes which are label maps. These volumes are n individual .nrrd files (I can save them as.mhd files as wel) and I can load them into Slicer as labelmaps.
They are named as L_frame1.nrrd … L_frame50.nrrd
3D volumes and each 3D volume of my 4D matrix have same size and same spacing.
So if V is my 4D matrix (x,y,z,time), size(V(:,:,:,t)) = size(L_framei) and same for spacing
- I would like to link each frame of the sequence to the corresponding 3D labelmap matrices.
I guess, I can overlay manually each frame and each labelmap volume and record the volume rendering scene in a sequence but it will be long to do it for my 50 frames.
- Slicer : 4.11.0
- Computer : Windows 10
Thank you for your help