Crop volume python script

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1

Please help me with the python scripting for crop volume to crop the brain?

2

Do you want to crop with a box-shaped ROI or you want to do skull stripping (blank out everything outside the brain)?

3

I need python script for both blank out everything outside the brain and cropping box-shaped ROI

4

For skull stripping, I would recommend HDBet or SwissSkullStripper extension.

For cropping with an ROI box, you can use the logic class of the Crop volume module.

5

please provide me the python script for swissskullstripper

6

SwissSkullStripper is a CLI module that you can use from Python as described here.