Dear All,
I have installed 3D Slicer recently. I have been working with some maps, but when I go to save the file, I just can choose the format *.nrrd/.nhdr… There are not other file formats to choose.
Do you know the reasons?
Thanks in advance,
Operating system:Windows
Slicer version:4.8.1
Expected behavior:
Actual behavior:
I assume you would like to export image segmentation as a labelmap volume to use in a third-party software. For this, go to Data module, right-click on the segmentatation node, and choose Export to labelmap. Then using File / Save scene, you can save into a wide range of file formats.
I would recommend to upgrade to latest stable release of Slicer (currently 4.10.2).
Thanks. But the problem I have found it is that when I am going to save I cannot find other file formats. I have been working with texture maps, and then, when I want to save the map, it just allows me .nrrd format. No other formats are available, like .nii.
Go to Data module, right-click on the segmentatation node, and choose Export to labelmap. Then using File / Save scene, you can save the exported labelmap into a wide range of file formats, including nifti (.nii).
Thanks again for your answer.
I have followed your guide, but still I have problems. Please, see attached two screenshots.
Regardless of the message, it is true that when I go to File/Save, now I can find a wide range of formats. If I save it, the image is empty. Should I select any other parameter in the segmentation tool?
Thanks
You don’t have any segments in your segmentation node, so there is nothing to save.
Do you have anything in that segment?
I assumed that by “map” you mean segmentation. Is that correct?
On the screenshots all I see is a masked volume, so it is not clear what you would like to with it.
I have found the solution through texture features.
Thanks
