DWIConvert problem - image flipped?

Support
1

Dear Slicer community,

I have a problem using the DWIConvert option in 3D Slicer. The data I use are the once downloaded from the HCP webpage for the WashU subjects (latest Q13 acquisition). I am actually working on the subject 102109 (diffusion preprocessed HCP data).

I ran the process through the 3D Slicer gui and through the terminal (cli-modules of Slicer). When I tried without the “allowLossyConversion” option I kept getting errors about the output and the pixel size so I could not get my output. This is why I was forced to try it this way. This is the command I used in the end (the same result, at least visually speaking appeared with the gui too):

/Applications/Slicer.app/Contents/lib/Slicer-4.8/cli-modules/DWIConvert --conversionMode FSLToNrrd --inputVolume /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/data.nii.gz --outputVolume dwi.nrrd --inputBValues /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/bvals.bval --inputBVectors /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/bvecs.bvec --outputDirectory /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/ --smallGradientThreshold 0.2 --useBMatrixGradientDirections --allowLossyConversion

The output I got in the terminal was:

Scale Factor for Multiple BValues: 0 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 1 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 2 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 3 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 4 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 5 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 6 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 7 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 8 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 9 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 10 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 11 – sqrt( 1985 / 3010 ) = 0.812077
Scale Factor for Multiple BValues: 12 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 13 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 14 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 15 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 16 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 17 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 18 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 19 – sqrt( 3010 / 3010 ) = 1
Scale Factor for Multiple BValues: 20 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 21 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 22 – sqrt( 2010 / 3010 ) = 0.817174
Scale Factor for Multiple BValues: 23 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 24 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 25 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 26 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 27 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 28 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 29 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 30 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 31 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 32 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 33 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 34 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 35 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 36 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 37 – sqrt( 1985 / 3010 ) = 0.812077
Scale Factor for Multiple BValues: 38 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 39 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 40 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 41 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 42 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 43 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 44 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 45 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 46 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 47 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 48 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 49 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 50 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 51 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 52 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 53 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 54 – sqrt( 1985 / 3010 ) = 0.812077
Scale Factor for Multiple BValues: 55 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 56 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 57 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 58 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 59 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 60 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 61 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 62 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 63 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 64 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 65 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 66 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 67 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 68 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 69 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 70 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 71 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 72 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 73 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 74 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 75 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 76 – sqrt( 3010 / 3010 ) = 1
Scale Factor for Multiple BValues: 77 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 78 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 79 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 80 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 81 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 82 – sqrt( 3010 / 3010 ) = 1
Scale Factor for Multiple BValues: 83 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 84 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 85 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 86 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 87 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 88 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 89 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 90 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 91 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 92 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 93 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 94 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 95 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 96 – sqrt( 2994 / 3010 ) = 0.997339
Scale Factor for Multiple BValues: 97 – sqrt( 999 / 3010 ) = 0.576102
Scale Factor for Multiple BValues: 98 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 99 – sqrt( 1994 / 3010 ) = 0.813915
Scale Factor for Multiple BValues: 100 – sqrt( 1004 / 3010 ) = 0.577542
Scale Factor for Multiple BValues: 101 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 102 – sqrt( 2993 / 3010 ) = 0.997172
Scale Factor for Multiple BValues: 103 – sqrt( 999 / 3010 ) = 0.576102
Scale Factor for Multiple BValues: 104 – sqrt( 2009 / 3010 ) = 0.816971
Scale Factor for Multiple BValues: 105 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 106 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 107 – sqrt( 1999 / 3010 ) = 0.814935
Scale Factor for Multiple BValues: 108 – sqrt( 3008 / 3010 ) = 0.999668
Scale Factor for Multiple BValues: 109 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 110 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 111 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 112 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 113 – sqrt( 994 / 3010 ) = 0.574659
Scale Factor for Multiple BValues: 114 – sqrt( 2983 / 3010 ) = 0.995505
Scale Factor for Multiple BValues: 115 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 116 – sqrt( 999 / 3010 ) = 0.576102
Scale Factor for Multiple BValues: 117 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 118 – sqrt( 2983 / 3010 ) = 0.995505
Scale Factor for Multiple BValues: 119 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 120 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 121 – sqrt( 2988 / 3010 ) = 0.996339
Scale Factor for Multiple BValues: 122 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 123 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 124 – sqrt( 2988 / 3010 ) = 0.996339
Scale Factor for Multiple BValues: 125 – sqrt( 1004 / 3010 ) = 0.577542
Scale Factor for Multiple BValues: 126 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 127 – sqrt( 3003 / 3010 ) = 0.998837
Scale Factor for Multiple BValues: 128 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 129 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 130 – sqrt( 2994 / 3010 ) = 0.997339
Scale Factor for Multiple BValues: 131 – sqrt( 1989 / 3010 ) = 0.812894
Scale Factor for Multiple BValues: 132 – sqrt( 1004 / 3010 ) = 0.577542
Scale Factor for Multiple BValues: 133 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 134 – sqrt( 2009 / 3010 ) = 0.816971
Scale Factor for Multiple BValues: 135 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 136 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 137 – sqrt( 2999 / 3010 ) = 0.998171
Scale Factor for Multiple BValues: 138 – sqrt( 994 / 3010 ) = 0.574659
Scale Factor for Multiple BValues: 139 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 140 – sqrt( 2984 / 3010 ) = 0.995672
Scale Factor for Multiple BValues: 141 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 142 – sqrt( 1989 / 3010 ) = 0.812894
Scale Factor for Multiple BValues: 143 – sqrt( 2988 / 3010 ) = 0.996339
Scale Factor for Multiple BValues: 144 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 145 – sqrt( 989 / 3010 ) = 0.573211
Scale Factor for Multiple BValues: 146 – sqrt( 1999 / 3010 ) = 0.814935
Scale Factor for Multiple BValues: 147 – sqrt( 3008 / 3010 ) = 0.999668
Scale Factor for Multiple BValues: 148 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 149 – sqrt( 1989 / 3010 ) = 0.812894
Scale Factor for Multiple BValues: 150 – sqrt( 2994 / 3010 ) = 0.997339
Scale Factor for Multiple BValues: 151 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 152 – sqrt( 1999 / 3010 ) = 0.814935
Scale Factor for Multiple BValues: 153 – sqrt( 3004 / 3010 ) = 0.999003
Scale Factor for Multiple BValues: 154 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 155 – sqrt( 1989 / 3010 ) = 0.812894
Scale Factor for Multiple BValues: 156 – sqrt( 2998 / 3010 ) = 0.998005
Scale Factor for Multiple BValues: 157 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 158 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 159 – sqrt( 2989 / 3010 ) = 0.996505
Scale Factor for Multiple BValues: 160 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 161 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 162 – sqrt( 3003 / 3010 ) = 0.998837
Scale Factor for Multiple BValues: 163 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 164 – sqrt( 3008 / 3010 ) = 0.999668
Scale Factor for Multiple BValues: 165 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 166 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 167 – sqrt( 999 / 3010 ) = 0.576102
Scale Factor for Multiple BValues: 168 – sqrt( 1989 / 3010 ) = 0.812894
Scale Factor for Multiple BValues: 169 – sqrt( 2994 / 3010 ) = 0.997339
Scale Factor for Multiple BValues: 170 – sqrt( 2988 / 3010 ) = 0.996339
Scale Factor for Multiple BValues: 171 – sqrt( 989 / 3010 ) = 0.573211
Scale Factor for Multiple BValues: 172 – sqrt( 2009 / 3010 ) = 0.816971
Scale Factor for Multiple BValues: 173 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 174 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 175 – sqrt( 2999 / 3010 ) = 0.998171
Scale Factor for Multiple BValues: 176 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 177 – sqrt( 1004 / 3010 ) = 0.577542
Scale Factor for Multiple BValues: 178 – sqrt( 2978 / 3010 ) = 0.99467
Scale Factor for Multiple BValues: 179 – sqrt( 2004 / 3010 ) = 0.815954
Scale Factor for Multiple BValues: 180 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 181 – sqrt( 1984 / 3010 ) = 0.811872
Scale Factor for Multiple BValues: 182 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 183 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 184 – sqrt( 2983 / 3010 ) = 0.995505
Scale Factor for Multiple BValues: 185 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 186 – sqrt( 989 / 3010 ) = 0.573211
Scale Factor for Multiple BValues: 187 – sqrt( 1994 / 3010 ) = 0.813915
Scale Factor for Multiple BValues: 188 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 189 – sqrt( 2993 / 3010 ) = 0.997172
Scale Factor for Multiple BValues: 190 – sqrt( 994 / 3010 ) = 0.574659
Scale Factor for Multiple BValues: 191 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 192 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 193 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 194 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 195 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 196 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 197 – sqrt( 2010 / 3010 ) = 0.817174
Scale Factor for Multiple BValues: 198 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 199 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 200 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 201 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 202 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 203 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 204 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 205 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 206 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 207 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 208 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 209 – sqrt( 3010 / 3010 ) = 1
Scale Factor for Multiple BValues: 210 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 211 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 212 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 213 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 214 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 215 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 216 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 217 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 218 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 219 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 220 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 221 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 222 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 223 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 224 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 225 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 226 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 227 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 228 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 229 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 230 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 231 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 232 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 233 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 234 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 235 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 236 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 237 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 238 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 239 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 240 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 241 – sqrt( 2995 / 3010 ) = 0.997505
Scale Factor for Multiple BValues: 242 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 243 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 244 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 245 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 246 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 247 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 248 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 249 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 250 – sqrt( 990 / 3010 ) = 0.573501
Scale Factor for Multiple BValues: 251 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 252 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 253 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 254 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 255 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 256 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 257 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 258 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 259 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 260 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 261 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 262 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 263 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 264 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 265 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 266 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 267 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 268 – sqrt( 3000 / 3010 ) = 0.998338
Scale Factor for Multiple BValues: 269 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 270 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 271 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 272 – sqrt( 5 / 3010 ) = 0.040757
Scale Factor for Multiple BValues: 273 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 274 – sqrt( 1995 / 3010 ) = 0.81412
Scale Factor for Multiple BValues: 275 – sqrt( 3005 / 3010 ) = 0.999169
Scale Factor for Multiple BValues: 276 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 277 – sqrt( 995 / 3010 ) = 0.574948
Scale Factor for Multiple BValues: 278 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 279 – sqrt( 2985 / 3010 ) = 0.995839
Scale Factor for Multiple BValues: 280 – sqrt( 2005 / 3010 ) = 0.816157
Scale Factor for Multiple BValues: 281 – sqrt( 1990 / 3010 ) = 0.813099
Scale Factor for Multiple BValues: 282 – sqrt( 1000 / 3010 ) = 0.57639
Scale Factor for Multiple BValues: 283 – sqrt( 2990 / 3010 ) = 0.996672
Scale Factor for Multiple BValues: 284 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 285 – sqrt( 1005 / 3010 ) = 0.57783
Scale Factor for Multiple BValues: 286 – sqrt( 2000 / 3010 ) = 0.815139
Scale Factor for Multiple BValues: 287 – sqrt( 3000 / 3010 ) = 0.998338
Wrote file: /Users/kyriakosdalamagkas/Downloads/102109 3/T1w/Diffusion//dwi.nrrd

The problem is that when I loaded the original nift file (I used the data.nii.gz with the dwi data from the HCP) the image was flipped compared to the image from the dwi.nrrd I got as an output. Also I think they are not registered to the same space anymore. Can you please guide me through? I am not very experienced with all these and can not figure it out. If you could please let me know what the problem is and what to do to resolve this and ensure the good quality of my data that would be great. I am basically trying to follow those two tutorials more or less: https://www.slicer.org/w/images/8/86/DiffusionMRIanalysisTutorial_Slicer4.5_SoniaPujol.pdf and http://dmri.slicer.org/tutorials/Slicer-4.8/FiberBundleSelectionAndScalarMeasurement.pdf to try out something for future work so your help would be much appreciated.

Thank you very much.

Best regards,
Magda.

2

Please try a recent nightly (SlicerPreview) build. There have been many fixes to DWIConvert since 4.8.

3

Thank you so much Isaiah for the prompt response, I will definitely try that and get back to you. I hope it will make a difference. I will keep you posted regardless of the outcome so that you know what happened.

4

Hi Isaiah,

Getting back to you as I promised after trying the new nightly version of Slicer. Unfortunately the image is still flipped for some reason. I really have no idea why that happens and what I can do to alter the outcome. I can not be comfortable with the results I get due to that. Here is my new command and output in terminal again. I tried with the gui as well in 3D Slicer and I got the same thing. Again I was forced to use the “allowLossyConversion” to make it work somehow.

/Applications/Slicer.app/Contents/lib/Slicer-4.9/cli-modules/DWIConvert --conversionMode FSLToNrrd --inputVolume /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/data.nii.gz --outputVolume NEWdwi_terminal.nrrd --inputBValues /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/bvals.bval --inputBVectors /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/bvecs.bvec --outputDirectory /Users/kyriakosdalamagkas/Downloads/102109\ 3/T1w/Diffusion/ --smallGradientThreshold 0.2 --useBMatrixGradientDirections --allowLossyConversion

======= DWI Convert Public Lib Ctest =========

INPUT VOLUME: /Users/kyriakosdalamagkas/Downloads/102109 3/T1w/Diffusion/data.nii.gz

Scale Factor for Multiple BValues: 0 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 1 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 2 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 3 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 4 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 5 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 6 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 7 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 8 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 9 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 10 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 11 – sqrt( 1985 / 3010 ) = 0.812077

Scale Factor for Multiple BValues: 12 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 13 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 14 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 15 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 16 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 17 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 18 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 19 – sqrt( 3010 / 3010 ) = 1

Scale Factor for Multiple BValues: 20 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 21 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 22 – sqrt( 2010 / 3010 ) = 0.817174

Scale Factor for Multiple BValues: 23 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 24 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 25 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 26 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 27 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 28 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 29 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 30 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 31 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 32 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 33 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 34 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 35 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 36 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 37 – sqrt( 1985 / 3010 ) = 0.812077

Scale Factor for Multiple BValues: 38 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 39 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 40 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 41 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 42 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 43 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 44 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 45 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 46 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 47 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 48 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 49 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 50 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 51 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 52 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 53 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 54 – sqrt( 1985 / 3010 ) = 0.812077

Scale Factor for Multiple BValues: 55 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 56 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 57 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 58 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 59 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 60 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 61 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 62 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 63 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 64 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 65 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 66 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 67 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 68 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 69 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 70 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 71 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 72 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 73 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 74 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 75 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 76 – sqrt( 3010 / 3010 ) = 1

Scale Factor for Multiple BValues: 77 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 78 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 79 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 80 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 81 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 82 – sqrt( 3010 / 3010 ) = 1

Scale Factor for Multiple BValues: 83 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 84 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 85 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 86 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 87 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 88 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 89 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 90 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 91 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 92 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 93 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 94 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 95 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 96 – sqrt( 2994 / 3010 ) = 0.997339

Scale Factor for Multiple BValues: 97 – sqrt( 999 / 3010 ) = 0.576102

Scale Factor for Multiple BValues: 98 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 99 – sqrt( 1994 / 3010 ) = 0.813915

Scale Factor for Multiple BValues: 100 – sqrt( 1004 / 3010 ) = 0.577542

Scale Factor for Multiple BValues: 101 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 102 – sqrt( 2993 / 3010 ) = 0.997172

Scale Factor for Multiple BValues: 103 – sqrt( 999 / 3010 ) = 0.576102

Scale Factor for Multiple BValues: 104 – sqrt( 2009 / 3010 ) = 0.816971

Scale Factor for Multiple BValues: 105 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 106 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 107 – sqrt( 1999 / 3010 ) = 0.814935

Scale Factor for Multiple BValues: 108 – sqrt( 3008 / 3010 ) = 0.999668

Scale Factor for Multiple BValues: 109 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 110 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 111 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 112 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 113 – sqrt( 994 / 3010 ) = 0.574659

Scale Factor for Multiple BValues: 114 – sqrt( 2983 / 3010 ) = 0.995505

Scale Factor for Multiple BValues: 115 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 116 – sqrt( 999 / 3010 ) = 0.576102

Scale Factor for Multiple BValues: 117 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 118 – sqrt( 2983 / 3010 ) = 0.995505

Scale Factor for Multiple BValues: 119 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 120 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 121 – sqrt( 2988 / 3010 ) = 0.996339

Scale Factor for Multiple BValues: 122 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 123 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 124 – sqrt( 2988 / 3010 ) = 0.996339

Scale Factor for Multiple BValues: 125 – sqrt( 1004 / 3010 ) = 0.577542

Scale Factor for Multiple BValues: 126 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 127 – sqrt( 3003 / 3010 ) = 0.998837

Scale Factor for Multiple BValues: 128 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 129 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 130 – sqrt( 2994 / 3010 ) = 0.997339

Scale Factor for Multiple BValues: 131 – sqrt( 1989 / 3010 ) = 0.812894

Scale Factor for Multiple BValues: 132 – sqrt( 1004 / 3010 ) = 0.577542

Scale Factor for Multiple BValues: 133 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 134 – sqrt( 2009 / 3010 ) = 0.816971

Scale Factor for Multiple BValues: 135 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 136 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 137 – sqrt( 2999 / 3010 ) = 0.998171

Scale Factor for Multiple BValues: 138 – sqrt( 994 / 3010 ) = 0.574659

Scale Factor for Multiple BValues: 139 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 140 – sqrt( 2984 / 3010 ) = 0.995672

Scale Factor for Multiple BValues: 141 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 142 – sqrt( 1989 / 3010 ) = 0.812894

Scale Factor for Multiple BValues: 143 – sqrt( 2988 / 3010 ) = 0.996339

Scale Factor for Multiple BValues: 144 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 145 – sqrt( 989 / 3010 ) = 0.573211

Scale Factor for Multiple BValues: 146 – sqrt( 1999 / 3010 ) = 0.814935

Scale Factor for Multiple BValues: 147 – sqrt( 3008 / 3010 ) = 0.999668

Scale Factor for Multiple BValues: 148 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 149 – sqrt( 1989 / 3010 ) = 0.812894

Scale Factor for Multiple BValues: 150 – sqrt( 2994 / 3010 ) = 0.997339

Scale Factor for Multiple BValues: 151 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 152 – sqrt( 1999 / 3010 ) = 0.814935

Scale Factor for Multiple BValues: 153 – sqrt( 3004 / 3010 ) = 0.999003

Scale Factor for Multiple BValues: 154 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 155 – sqrt( 1989 / 3010 ) = 0.812894

Scale Factor for Multiple BValues: 156 – sqrt( 2998 / 3010 ) = 0.998005

Scale Factor for Multiple BValues: 157 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 158 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 159 – sqrt( 2989 / 3010 ) = 0.996505

Scale Factor for Multiple BValues: 160 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 161 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 162 – sqrt( 3003 / 3010 ) = 0.998837

Scale Factor for Multiple BValues: 163 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 164 – sqrt( 3008 / 3010 ) = 0.999668

Scale Factor for Multiple BValues: 165 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 166 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 167 – sqrt( 999 / 3010 ) = 0.576102

Scale Factor for Multiple BValues: 168 – sqrt( 1989 / 3010 ) = 0.812894

Scale Factor for Multiple BValues: 169 – sqrt( 2994 / 3010 ) = 0.997339

Scale Factor for Multiple BValues: 170 – sqrt( 2988 / 3010 ) = 0.996339

Scale Factor for Multiple BValues: 171 – sqrt( 989 / 3010 ) = 0.573211

Scale Factor for Multiple BValues: 172 – sqrt( 2009 / 3010 ) = 0.816971

Scale Factor for Multiple BValues: 173 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 174 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 175 – sqrt( 2999 / 3010 ) = 0.998171

Scale Factor for Multiple BValues: 176 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 177 – sqrt( 1004 / 3010 ) = 0.577542

Scale Factor for Multiple BValues: 178 – sqrt( 2978 / 3010 ) = 0.99467

Scale Factor for Multiple BValues: 179 – sqrt( 2004 / 3010 ) = 0.815954

Scale Factor for Multiple BValues: 180 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 181 – sqrt( 1984 / 3010 ) = 0.811872

Scale Factor for Multiple BValues: 182 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 183 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 184 – sqrt( 2983 / 3010 ) = 0.995505

Scale Factor for Multiple BValues: 185 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 186 – sqrt( 989 / 3010 ) = 0.573211

Scale Factor for Multiple BValues: 187 – sqrt( 1994 / 3010 ) = 0.813915

Scale Factor for Multiple BValues: 188 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 189 – sqrt( 2993 / 3010 ) = 0.997172

Scale Factor for Multiple BValues: 190 – sqrt( 994 / 3010 ) = 0.574659

Scale Factor for Multiple BValues: 191 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 192 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 193 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 194 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 195 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 196 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 197 – sqrt( 2010 / 3010 ) = 0.817174

Scale Factor for Multiple BValues: 198 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 199 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 200 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 201 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 202 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 203 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 204 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 205 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 206 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 207 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 208 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 209 – sqrt( 3010 / 3010 ) = 1

Scale Factor for Multiple BValues: 210 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 211 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 212 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 213 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 214 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 215 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 216 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 217 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 218 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 219 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 220 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 221 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 222 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 223 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 224 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 225 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 226 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 227 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 228 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 229 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 230 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 231 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 232 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 233 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 234 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 235 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 236 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 237 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 238 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 239 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 240 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 241 – sqrt( 2995 / 3010 ) = 0.997505

Scale Factor for Multiple BValues: 242 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 243 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 244 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 245 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 246 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 247 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 248 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 249 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 250 – sqrt( 990 / 3010 ) = 0.573501

Scale Factor for Multiple BValues: 251 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 252 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 253 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 254 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 255 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 256 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 257 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 258 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 259 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 260 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 261 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 262 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 263 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 264 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 265 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 266 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 267 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 268 – sqrt( 3000 / 3010 ) = 0.998338

Scale Factor for Multiple BValues: 269 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 270 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 271 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 272 – sqrt( 5 / 3010 ) = 0.040757

Scale Factor for Multiple BValues: 273 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 274 – sqrt( 1995 / 3010 ) = 0.81412

Scale Factor for Multiple BValues: 275 – sqrt( 3005 / 3010 ) = 0.999169

Scale Factor for Multiple BValues: 276 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 277 – sqrt( 995 / 3010 ) = 0.574948

Scale Factor for Multiple BValues: 278 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 279 – sqrt( 2985 / 3010 ) = 0.995839

Scale Factor for Multiple BValues: 280 – sqrt( 2005 / 3010 ) = 0.816157

Scale Factor for Multiple BValues: 281 – sqrt( 1990 / 3010 ) = 0.813099

Scale Factor for Multiple BValues: 282 – sqrt( 1000 / 3010 ) = 0.57639

Scale Factor for Multiple BValues: 283 – sqrt( 2990 / 3010 ) = 0.996672

Scale Factor for Multiple BValues: 284 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 285 – sqrt( 1005 / 3010 ) = 0.57783

Scale Factor for Multiple BValues: 286 – sqrt( 2000 / 3010 ) = 0.815139

Scale Factor for Multiple BValues: 287 – sqrt( 3000 / 3010 ) = 0.998338

Wrote file: /Users/kyriakosdalamagkas/Downloads/102109 3/T1w/Diffusion//NEWdwi_terminal.nrrd

Any ideas? Thanks again for all your help!

Best regards,

Magda.