Dear Andras @lassoan . I’m segmenting temporal bone using ABL Temporal Bone Segmentation. I stuck at step 2: Rigid registration. When I apply Rigid registration, the process stopped at 14% and it said: “command ‘elastix’ returned non-zero exit status 1”. I’ve installed SlicerElastix, Slicer version…

Do you see any details about the error in the application log?

Here it is @lassoan . Lots of thanks. [image]

The messages are not visible in these screenshots. Instead of posting pictures, could you copy here the log message text (in menu: Help / Report a bug)? Thank you.

Dear Andras. Here is the message log. It’s too long. I’ve deleted some parts. Please take a look at it. Thank you very much. “ABLTemporalBoneSegmentationModule” [INFO][Python] 05.02.2021 19:34:26 [Python] (C:\Users\USER\AppData\Roaming\NA-MIC\Extensions-29402\SlicerElastix\lib\Slicer-4.11\qt-scrip…

[image] DAT_Minh: Too many samples map outside moving image buffer: 188 / 1117 This is probably the most common image registration error and it means that the two volumes are too far from each other, so it is not possible to compute the similarity metric. This usually happens when the input i…

Zooming in/out the slice view (“Adjust the field of view…” button) does not change the images or their alignments. It has no effect on registration. What you may need to do is to transform the image with manual or semi-automatic registration methods before running the automatic method; crop the ima…

Thank you very much. I will try again.

Dear Andras, I have a few questions: I tried to pre-align the Left temporal volume with Atlas_L volume. In the ABL temporal bone segmentation module, Atlas_L exist as a volume (picture): [image.jpg] But when I turned to Data module, Atlas_L module does not appear as a volume, but CochleaRegistra…

Elastix registration fails: Too many samples map outside moving image buffer

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DAT_Minh (DAT Minh) February 6, 2021, 11:29am 8

Dear Andras. I used two methods of alignment shown in the yellow circle in the pictures attached. None of them work.

What do you mean by pre-align manually? Thank you.

Topic		Replies	Views
Elastix returned non-zero exit status 1 Support registration , elastix	10	1761	December 5, 2022
Elastix masking registration Support registration , masking	12	4530	October 25, 2024
ABL Temporal Bone Segmentation Module ERROR Support registration , segmentation , python , 3d-model	1	90	October 10, 2024
Error: Command 'elastix' returned non-zero exit status 3221225477 Support registration	1	1176	March 8, 2022
ABL Temporal Bone Segmentation Module Support segmentation	12	1631	May 22, 2023

Elastix registration fails: Too many samples map outside moving image buffer

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