Hi there, Currently I’ve been working on automating a work flow in python that goes like the following: Load CT scans (as .tiffs) Create a segmentation and threshold to identify air in the scans Automate a mouse click in a known location and use the “Remove selected island” feature Apply the “Kee…

Hi, segmentation nodes cannot be saved as STL directly. You need to first export the segmentation to model node: Script repository — 3D Slicer documentation Then, model nodes can be saved as STL files.

You can use the vtkSlicerSegmentationsModuleLogic::ExportSegmentsClosedSurfaceRepresentationToFiles function to export the segmentation to stl: https://apidocs.slicer.org/master/classvtkSlicerSegmentationsModuleLogic.html#a4b5328985b2d98cbbc93a5b2ae7fde6b

This post ended up providing enough of a solution framework for me to figure it out. [image] Tips for getting started loading and batch segmenting files with Slicer in python? Support Check this script example for running island tool and exporitng the segmentation and writ…

Export volume (or segment?) to stl file with python

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Mike_Flanigan (Mike Flanigan) September 21, 2022, 2:18am 4

This post ended up providing enough of a solution framework for me to figure it out.

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Export volume (or segment?) to stl file with python

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