Good aftrenoon, I would like to export each slice of a dicom as an image. Ideally, it should be a sequence of png. slices with transparency; but it can also be a sequence of jpg, or a movie that respects the proportions of the slices (with a regular speed of movement through the volume). I have s…

This software, ‘IRFANVIEW’ does the job: https://www.youtube.com/watch?v=JatzYqDHftM; but I guess that it can be done within 3DSlicer…

It would be a really simple script in SimpleITK. Something like this: import SimpleITK as sitk img = sitk.ReadImage("source_image.dcm") sitk.WriteImage(img, "target_image.png")

If you need an open source converter, you can try a (X)MedCon .

A simple solution in Slicer is to use Screen Capture module. You can choose a slice view, position range, and number of images to export. Slicer offers a couple of features that the trivial export methods cannot directly do: save output as image sequence, animated GIF, or video save markups, segme…

Ooh, great, that’s exactly what I needed; thank you. By the way, is it possible to transform the black into a transparent at the moment of the screen capture?

I achieve to visualise very contrasted dicoms inside blender after using a video of it as a mask, but I have very little control on it, since the alpha is recorded all at once and cannot be tweaked based on the original image…

It is not clear what you are trying to achieve. Can you post a few screenshots? Do you want to change image opacity depending on image intensity? Since Blender can do everything (it is the 3D Slicer of 3D modeling), I’m sure you can set this up there.

Yes actually I have been trying to use the blender addon called ‘OrtogOnBlender’ (which is more a side version of Blender since) for a few days but keep on failing to use it; therefore I tried to do it by myself with the default 2.8 version and achieve to do it through two techniques: -the first pa…

It is not clear what you are trying to achieve. Can you post a few screenshots that shows what you have now and what is still not right?

First method: how to convert a video into an image sequence with alpha channel (works well but gives very little control on the transparency) [image] Second method:importing the images without transparency and converting the black into transparent on each image (best option to control the transpare…

Extract images from Dicom

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Extract images from Dicom

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