Hi 3D Slicer team,
I’m having a problem with using HD-BET to extract the brain from a T1WI with contrast .nrrd file. When I select the input and output files, and click ‘Apply (Image 1),’ it seems like it’s working in the background with a rotating cursor, but after 3-4 minutes, the layout on the right only shows a single frame (Yellow arrows in Image 2). Also, when I try to save the stripped file in either .nrrd or .nii format (Image 3), nothing gets saved.
Do you have any suggestions for what I can do to fix this issue?