Dears 3DSlicer developers:
How can I use HCP842 Tractography Atlas to extract “fiber bundles” in DWI images.
I want to use 80 regions segmented in this atlas as “Label Maps” in UKF Tractography.
I must mentioned that I get this atlas HCP842 Tractography from the folder with the name of Atlas in DSI Studio software (HCP842_tractography.nii.gz). In this file, the brain is segmented in 80 regions:
My ultimate goal is that I want to do all the steps tractography in “DSI Studio” software in 3DSlicer which includes in the following steps:
1- Import DWI images.
2- Normalize these images with Tractography atlases such as HCP842.
3- Exact fiber bundles based on the regions segmented in this atlas.
4- Get these fiber bundles registered with DWI images.
Thanks a lot.