Integrate deep learning module medical segment into a 3D slicer

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Operating system:
Slicer version:
Expected behavior:
Actual behavior:

I’m looking to integrate deep learning deep learning into a 3D slicer.
I found a similar post about brain segmentation (GitHub - fepegar/SlicerParcellation: 3D Slicer modules for brain segmentation using deep learning.). but t install according to the instructions, the 3D slicer gives an error.
Hope everybody help please.
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There should be messages in the python console telling why it didn’t load. It would be great if you could debug the module and contribute fixes. @Fernando may have additional suggestions.

1 Like
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I look forward to everyone’s help to solve this problem.
I followed the instructions on the github code link. But I don’t know if I’ve done enough.

  • I have downloaded torchIO and pytorch on 3D slicer extension.
  • I have downloaded and unzipped the github code.
    I then linked the code to the 3D slicer via Edit/application setting/modules/ Additional modules path. and I passed the entire link code in there.
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When I click on BrainParcellation, there is no message and nothing happens.

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when I read the author’s code I see that the UNet network downloads are all open source and library. So I don’t know if doing it on my computer will need to fix or change this code.
Thank you.

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Thanks for the ping, Steve.

Hi, @Thu_n_Chu_th. Could you please share which version of Slicer you’re using and whether you see any messages in the Python console, as @pieper suggested?