[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Session start time …: 20260123_104632
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Slicer version …: 5.10.0 (revision 34045 / a2b6d08) macosx-amd64 - installed release
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Operating system …: macOS / 26.2 / 25C56 / UTF-8 - 64-bit
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Memory …: 16384 MB physical, 3072 MB virtual
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - CPU …: Apple M3, 8 cores, 8 logical processors
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Qt configuration …: version 5.15.18, with SSL, requested OpenGL 3.2 (core profile)
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - DCMTK configuration …: version 3.6.8, no SSL
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Internationalization …: disabled, language=
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Developer mode …: disabled
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Application path …: /Applications/Slicer.app/Contents/MacOS
[DEBUG][Qt] 23.01.2026 10:46:32 (unknown:0) - Additional module paths ..: Extensions-34045/NNUNet/lib/Slicer-5.10/qt-scripted-modules, Extensions-34045/PyTorch/lib/Slicer-5.10/qt-scripted-modules, Extensions-34045/DentalSegmentator/lib/Slicer-5.10/qt-scripted-modules, Extensions-34045/SlicerPythonTestRunner/lib/Slicer-5.10/qt-scripted-modules
[INFO][Stream] 23.01.2026 10:46:32 (unknown:0) -
[DEBUG][Python] 23.01.2026 10:46:35 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-5.10/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 23.01.2026 10:46:35 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-5.10/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 23.01.2026 10:46:35 (unknown:0) - Switch to module: “Welcome”
[WARNING][Qt] 23.01.2026 10:46:38 (unknown:0) - Populating font family aliases took 155 ms. Replace uses of missing font family “Courier” with one that exists to avoid this cost.
[DEBUG][Qt] 23.01.2026 10:46:40 (unknown:0) - Python console user input: slicer.util.pip_install(“acvl_utils==0.2”)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Collecting acvl_utils==0.2
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Using cached acvl_utils-0.2-py3-none-any.whl
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: numpy in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (2.0.2)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: batchgenerators in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (0.25.1)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: torch in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (2.2.2)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: SimpleITK in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (2.5.2rc2.dev6)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: scikit-image in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (0.26.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: connected-components-3d in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from acvl_utils==0.2) (3.26.1)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: pillow>=7.1.2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (11.2.1)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: scipy in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (1.13.1)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: scikit-learn in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (1.8.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: future in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (1.0.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: pandas in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (3.0.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: unittest2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (1.1.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: threadpoolctl in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from batchgenerators->acvl_utils==0.2) (3.6.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: networkx>=3.0 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-image->acvl_utils==0.2) (3.6.1)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: imageio!=2.35.0,>=2.33 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-image->acvl_utils==0.2) (2.37.2)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: tifffile>=2022.8.12 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-image->acvl_utils==0.2) (2026.1.14)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: packaging>=21 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-image->acvl_utils==0.2) (25.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: lazy-loader>=0.4 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-image->acvl_utils==0.2) (0.4)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: filelock in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from torch->acvl_utils==0.2) (3.20.3)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: typing-extensions>=4.8.0 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from torch->acvl_utils==0.2) (4.14.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: sympy in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from torch->acvl_utils==0.2) (1.14.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: jinja2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from torch->acvl_utils==0.2) (3.1.6)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: fsspec in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from torch->acvl_utils==0.2) (2026.1.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: MarkupSafe>=2.0 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from jinja2->torch->acvl_utils==0.2) (3.0.3)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: python-dateutil>=2.8.2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from pandas->batchgenerators->acvl_utils==0.2) (2.9.0.post0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: joblib>=1.3.0 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from scikit-learn->batchgenerators->acvl_utils==0.2) (1.5.3)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: mpmath<1.4,>=1.1.0 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from sympy->torch->acvl_utils==0.2) (1.3.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Collecting argparse (from unittest2->batchgenerators->acvl_utils==0.2)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Using cached argparse-1.4.0-py2.py3-none-any.whl.metadata (2.8 kB)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: six>=1.4 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from unittest2->batchgenerators->acvl_utils==0.2) (1.17.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: traceback2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from unittest2->batchgenerators->acvl_utils==0.2) (1.4.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Requirement already satisfied: linecache2 in /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages (from traceback2->unittest2->batchgenerators->acvl_utils==0.2) (1.0.0)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Using cached argparse-1.4.0-py2.py3-none-any.whl (23 kB)
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Installing collected packages: argparse, acvl_utils
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Attempting uninstall: acvl_utils
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Found existing installation: acvl_utils 0.2.5
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Uninstalling acvl_utils-0.2.5:
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Successfully uninstalled acvl_utils-0.2.5
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - ERROR: pip’s dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - nnunetv2 2.6.2 requires acvl-utils<0.3,>=0.2.3, but you have acvl-utils 0.2 which is incompatible.
[INFO][Stream] 23.01.2026 10:46:41 (unknown:0) - Successfully installed acvl_utils-0.2 argparse-1.4.0
[DEBUG][Qt] 23.01.2026 10:47:30 (unknown:0) - Switch to module: “DICOM”
[INFO][Python] 23.01.2026 10:47:32 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-5.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:445) - Loading with imageIOName: GDCM
[DEBUG][Python] 23.01.2026 10:47:32 [Python] (/Applications/Slicer.app/Contents/lib/Slicer-5.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:567) - DICOM window/level (1048.0/4096.0) set to volume ‘11: Axial’ from SOP instance 1.76.380.18.11.1240614171306551.5272.92.170.
[DEBUG][Qt] 23.01.2026 10:47:38 (unknown:0) - Switch to module: “DentalSegmentator”
[ERROR][VTK] 23.01.2026 10:47:38 [vtkSlicerSegmentEditorLogic (0x600003ca41a0)] (vtkSlicerSegmentEditorLogic.cxx:846) - SetSourceVolumeNode: need to set segment editor and segmentation nodes first
[INFO][Python] 23.01.2026 10:47:43 [Python] (/Applications/Slicer.app/Contents/Extensions-34045/NNUNet/lib/Slicer-5.10/qt-scripted-modules/SlicerNNUNetLib/InstallLogic.py:57) - nnUNet is already installed (2.6.2) and compatible with requested version (nnunetv2).
[DEBUG][Python] 23.01.2026 10:47:43 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): www.google.com:443
[DEBUG][Python] 23.01.2026 10:47:44 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://www.google.com:443 “GET / HTTP/1.1” 200 None
[DEBUG][Python] 23.01.2026 10:47:44 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 23.01.2026 10:47:44 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 “GET /repos/gaudot/SlicerDentalSegmentator HTTP/1.1” 200 1480
[DEBUG][Python] 23.01.2026 10:47:45 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 23.01.2026 10:47:45 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 “GET /repos/gaudot/SlicerDentalSegmentator/releases HTTP/1.1” 200 828
[DEBUG][Python] 23.01.2026 10:47:45 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 23.01.2026 10:47:46 [Python] (/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 “GET /repos/gaudot/SlicerDentalSegmentator/releases/147040025/assets HTTP/1.1” 200 602
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) -
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - A module that was compiled using NumPy 1.x cannot be run in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - NumPy 2.0.2 as it may crash. To support both 1.x and 2.x
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - versions of NumPy, modules must be compiled with NumPy 2.0.
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - Some module may need to rebuild instead e.g. with ‘pybind11>=2.12’.
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) -
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - If you are a user of the module, the easiest solution will be to
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - downgrade to ‘numpy<2’ or try to upgrade the affected module.
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - We expect that some modules will need time to support NumPy 2.
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) -
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - Traceback (most recent call last): File “/Applications/Slicer.app/Contents/Extensions-34045/DentalSegmentator/lib/Slicer-5.10/qt-scripted-modules/DentalSegmentatorLib/SegmentationWidget.py”, line 238, in onApplyClicked
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - self._runSegmentation()
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/Extensions-34045/DentalSegmentator/lib/Slicer-5.10/qt-scripted-modules/DentalSegmentatorLib/SegmentationWidget.py”, line 257, in _runSegmentation
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - if not parameter.isSelectedDeviceAvailable():
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/Extensions-34045/NNUNet/lib/Slicer-5.10/qt-scripted-modules/SlicerNNUNetLib/Parameter.py”, line 66, in isSelectedDeviceAvailable
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - import torch
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/init.py”, line 1477, in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - from .functional import * # noqa: F403
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/functional.py”, line 9, in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - import torch.nn.functional as F
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/nn/init.py”, line 1, in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - from .modules import * # noqa: F403
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/nn/modules/init.py”, line 35, in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - from .transformer import TransformerEncoder, TransformerDecoder,
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - File “/Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/nn/modules/transformer.py”, line 20, in
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - device: torch.device = torch.device(torch._C._get_default_device()), # torch.device(‘cpu’),
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - /Applications/Slicer.app/Contents/lib/Python/lib/python3.12/site-packages/torch/nn/modules/transformer.py:20: UserWarning: Failed to initialize NumPy: _ARRAY_API not found (Triggered internally at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/utils/tensor_numpy.cpp:84.)
[CRITICAL][Stream] 23.01.2026 10:47:47 (unknown:0) - device: torch.device = torch.device(torch._C._get_default_device()), # torch.device(‘cpu’),
[ERROR][Python] 23.01.2026 10:47:56 [Python] (/Applications/Slicer.app/Contents/bin/Python/slicer/util.py:3146) - Failed to load the segmentation.
Something went wrong during the nnUNet processing.
Please check the logs for potential errors and contact the library maintainers.