Qt5 build : a few hiccups

chir.set · August 26, 2017, 11:26am

After using the Qt5 build for one week, here are some minor problems.

Whenever an item is selected in the Fiducial/ROI/Ruler tool, the items get duplicated to an certain number of items that I didn’t count.
In Volume Rending module, the items of the ‘View’ combobox are no longer checkable.
Switching to module ‘SceneViews’ crashes Slicer :

Switch to module: “SceneViews”
qSlicerSceneViewsModuleWidgetPrivate::setupUi - Capture link not implemented with Qt5
qSlicerSceneViewsModuleWidgetPrivate::setupUi - Restore scroll bar position not implemented with Qt5
As it says, it has yet to be implemented.

All these are found on today’s build after ‘git pull’ (2017-08-26).

I think developers might be interested in this post.

Regards.

lassoan · August 27, 2017, 12:02am

Thanks a lot for reporting - it’s very useful. I’ve added these issues to the Qt5 migration lab page.

chir.set · September 23, 2017, 3:14pm

May I report one more crash source with the QT5/VTK8 build:

Any tool in the new segment editor crashes Slicer as soon as the corresponding button is pressed. The old segment editor is still functional.

Best.

lassoan · September 23, 2017, 6:57pm

Thanks, we’ll look into this! What operating system do you use?

chir.set · September 24, 2017, 8:06am

I use ArchLinux to build and run.

cpinter · October 12, 2017, 2:43pm

@chir.set The issue has been fixed just now in https://github.com/Slicer/Slicer/commit/7de0d6a6e71694ac808a2e73da3fd3c3300f708c

chir.set · October 16, 2017, 9:03am

Thanks. But when I click on ‘Show details’ as per attached image, Slicer crashes immediately.

Screenshot_20171016_105921

cpinter · October 16, 2017, 2:13pm

Thanks for testing! Unfortunately I cannot reproduce this, as I only have a Windows build with Qt5. I’m building one on Mac now and see if it can be reproduced there. In the meantime @Davide_Punzo Can you please try to see if this is as easy to fix as the previous one? Thanks a lot!

Davide_Punzo · October 16, 2017, 2:47pm

https://github.com/Slicer/Slicer/pull/819 should fix it

cpinter · October 16, 2017, 3:01pm

Thanks a lot, @Davide_Punzo! I integrated the pull request in https://github.com/Slicer/Slicer/commit/0c3f2cca8d11ed49d55724bca9ca166b08309d0d

@chir.set Please don’t get discourdaged and keep sending us any issues you find

chir.set · January 12, 2018, 8:08pm

Slicer crashes in Threshold Scalar Volume on ‘Apply’, if ‘Below’ a threshold value is selected. It doesn’t crash if ‘Above’ or ‘Outside’ is chosen. Using Qt5/VTK9 build on Linux.

chir.set · January 12, 2018, 8:12pm

Slicer will crash on application exit if the ‘Standard Quantitative’ pane has been shown, whether it is shown or not on exit. Using Qt5/VTK9 build on Linux.

hherhold · January 14, 2018, 3:35pm

Qt5 build failing on OS X 10.12.6. Was working a few days ago, sorry I can’t be more specific than that.

Configured with:

/Applications/CMake.app/Contents/MacOS/CMake -DQt5_DIR:PATH=/usr/local/opt/qt

First errors:

Skipping extension packaging: DataStore - Slicer_SOURCE_DIR is defined.

– Configuring remote module: CompareVolumes
– Configuring Scripted module: CompareVolumes

– Configuring remote module: LandmarkRegistration
– Configuring Scripted module: LandmarkRegistration
CMake Warning at Utilities/Scripts/SlicerWizard/doc/CMakeLists.txt:41 (message):
Warning: sphinx-build not found: Python documentation will not be created

– Setting ‘CTEST_MODEL’ variable with default value ‘Experimental’
– Setting ‘MIDAS_PACKAGE_URL’ variable with default value ‘http://slicer.kitware.com/midas3’
– Setting ‘MIDAS_PACKAGE_EMAIL’ variable with default value ‘OBFUSCATED’
– Setting ‘MIDAS_PACKAGE_API_KEY’ variable with default value ‘OBFUSCATED’
– Setting CPACK_PACKAGE_NAME to ‘Slicer’
– Setting CPACK_PACKAGE_VENDOR to ‘NA-MIC’
– Setting CPACK_PACKAGE_VERSION_MAJOR to ‘4’
– Setting CPACK_PACKAGE_VERSION_MINOR to ‘9’
– Setting CPACK_PACKAGE_VERSION_PATCH to ‘0’
– Setting CPACK_PACKAGE_VERSION to ‘4.9.0-2018-01-13’
– Setting CPACK_PACKAGE_INSTALL_DIRECTORY to ‘Slicer 4.9.0-2018-01-13’
– Setting CPACK_PACKAGE_DESCRIPTION_FILE to ‘/Users/hherhold/Development/slicer/Slicer/README.txt’
– Setting CPACK_RESOURCE_FILE_LICENSE to ‘/Users/hherhold/Development/slicer/Slicer/License.txt’
– Setting CPACK_PACKAGE_DESCRIPTION_SUMMARY to ‘Medical Visualization and Processing Environment for Research’
– Setting CPACK_PACKAGE_ICON to ‘/Users/hherhold/Development/slicer/Slicer/Applications/SlicerApp/Resources/Slicer.icns’
– Configuring done
CMake Error at Libs/vtkAddon/CMakeLists.txt:94 (add_library):
Cannot find source file:

/Users/hherhold/Development/slicer/build-qt5/Slicer-build/Libs/vtkAddon/vtkAddonHierarchy.stamp.txt

Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp
.hxx .in .txx

CMake Error at Libs/vtkTeem/CMakeLists.txt:87 (add_library):
Cannot find source file:

/Users/hherhold/Development/slicer/build-qt5/Slicer-build/Libs/vtkTeem/vtkTeemHierarchy.stamp.txt

Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp
.hxx .in .txx

cpinter · January 14, 2018, 4:48pm

Thanks! I will check out both issues on Monday.

cpinter · January 16, 2018, 3:23pm

@hherhold I’ve started a Mac build (although it’s 10.13.1), will let you know how it went.

@chir.set I wasn’t able to reproduce the crash with either way, but I tried on Windows. If anyone uses Linux for development, please test this one. @jcfr could you try? Otherwise I’ll need to do a build on a VM. Thanks!

jcfr · January 16, 2018, 3:30pm

Qt5 build failing on OS X 10.12.6. Was working a few days ago, sorry I can’t be more specific than that
Cannot find source file: … Libs/vtkTeem/vtkTeemHierarchy.stamp.txt

Thanks to @adamrankin, the issue related to VTK hierarchy stamps file should be fixed in r26834

ArchLinux … Any tool in the new segment editor crashes Slicer as soon as the corresponding button is pressed.

I am not able to reproduce the crash.

If this is still an issue, setting up a VM may be the best way forward.

Davide_Punzo · January 16, 2018, 10:57pm

this was fixed in the past in Dual 3D mode: loading a scene with a single view node, second view is uninitialised · Issue #819 · Slicer/Slicer · GitHub and https://github.com/Slicer/Slicer/commit/0c3f2cca8d11ed49d55724bca9ca166b08309d0d

Instead I confirm this one:

Sorry, but I didn’t understand this other one:

Davide_Punzo · January 16, 2018, 11:01pm

In addition the linux version (at least my build)

some & still appear in the comboboxes and icons in modules and views seems much smaller

image1854×1009 308 KB

2)some menu have some misalignment. E.g. settings and data module:

image1920×1080 357 KB

image1920×1080 497 KB

cpinter · January 16, 2018, 11:58pm

Thanks Davide! Was the module name in the module selector like this before (“Se&gment Editor”)?
Update: Nevermind I see the marking on the first screenshot.

Davide_Punzo · January 17, 2018, 8:44am

you are welcome! the & issue (it shows in many places like the module menu, titles in plotting views, etc. ) was present before https://github.com/Slicer/Slicer/pull/864

The smaller icons (?), menu misalignment (ctkCollapsiblegroupbox?) and smaller ctkCollapsibleButton are a result of the new style set in https://github.com/Slicer/Slicer/pull/864.

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Qt5 build : a few hiccups

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