Scripted CLI Module simplest set-up

[pieper (Steve Pieper (Isomics, Inc.))]

The command line example in the post below should give you an idea. Yes, you can run it as a subprocess launched from Slicer. HTH.

How can I convert DICOM series to NRRD files in batch mode?

Here is how you can do the conversion in batch mode. First, install mpReview extension. This will add two new modules: mpReview and mpReviewPreprocessor. mpReviewPreprocessor can be used to volume-reconstruct any collection of DICOM files in batch mode using Slicer DICOM plugins. It can be accessed from the Slicer GUI, but you can also run the script as from the command line follows (you will need to update the path to the preprocessor to the on your system after installing the script, or you …