SLICER SALT .... having trouble with "Generate Shape Analysis Structure"

Community SlicerSALT
1

I’m having trouble with data importer, SlicerSalt 6.0.0.

I can import and view the sampledata, but when I try to “Generate Shape Analysis Structure” I get this error on windows and linux.

Traceback (most recent call last):

File “/xxx/SlicerSALT-6.0.0-linux-amd64/bin/../lib/SlicerSALT-5.9/qt-scripted-modules/DataImporter.py”, line 1457, in onGenerateShapeAnalysisStructure

self.logic.generateShapeAnlaysisStructure(self.inputShapeAnalysisPath)

File “/xxx/SlicerSALT-6.0.0-linux-amd64/bin/../lib/SlicerSALT-5.9/qt-scripted-modules/DataImporter.py”, line 734, in generateShapeAnlaysisStructure

slicer.mrmlScene.RemoveNode(slicer.util.getNode(pattern=full_segmentName+’ LabelMap_ColorTable’))

File “/xxx/SlicerSALT-6.0.0-linux-amd64/bin/Python/slicer/util.py”, line 1614, in getNode

raise MRMLNodeNotFoundException(“could not find nodes in the scene by name or id ‘%s’” % (pattern if (isinstance(pattern, str)) else “”))

slicer.util.MRMLNodeNotFoundException: could not find nodes in the scene by name or id ‘case01_31 LabelMap_ColorTable’

2

Hi, thanks for trying SALT and reporting this issue.

A fix has just been merged here: BUG: Fix crash due to deprecated functionality by vicory · Pull Request #359 · Kitware/SlicerSALT · GitHub

It should show up in the nightly builds starting tomorrow. You can find those here: Kitware Data

3

looking forward… Thanks…

4

working in the nightly