when I use“ spharm-pdm correspondence improvement ”the python show "OSError：Invalid argument：“C：//users//…//2022—06—16T11:51:18.762701.csv”.
the input models directory: i use the*SPHARM.vtk.
the input fiducial files directory :i use the makeup model to define the landmark on the "SPHARM.vtk"model
Common unit sphere directory：i use only one “para.vtk”file
can anyone tell me what’s wrong，thank you
I am facing the same issue - unfortunately.
Currently, I am using SlicerSALT software version 3.0.0-2022 - GUI. Operating system: Windows 10
I have already generated the correspondence for all shapes; however, further improvement to the correspondence is needed before running “Covariant significant testing” and “Population Analysis” modules.
After uploading the required material into the SPHARM PDM Correspondence improvement module [I got no response - and no error message].
The material uploaded into the "SPHARM PDM Correspondence improvement" module include:
*Input models directory*: all models with *SPHARM.vtk extension. *Input fiducial files directory*: I used the markeup module along with ALPACA module to automate the process of generating of landmarks for "SPHARM.vtk" models in my sample. The landmark files was saved as (.FCSV file). *Common unit sphere directory*：I used one of the “para.vtk” file generated after running the SPHARM-PDM generator module.
It will be helpful if someone can share with us his knowledge regarding this pipeline, and how to correct it.
Thanks in advance.
@Connor-Bowley could you please take a look into this problem? Thank you!
I will look into this, but I may not have something until next week.
Still looking into this, but I noticed the tutorial wasn’t linked properly. There is a tutorial here that may be of some use.
I have found and fixed a couple problems with this module on Windows and am working to get the fixes into the mainline SlicerSALT build.
Next steps (for me):
- Pull request into RigidAlignment: Run on windows by Connor-Bowley · Pull Request #8 · NIRALUser/RigidAlignment · GitHub
- Open a pull request into GROUPS with the branch GitHub - Connor-Bowley/GROUPS at run-on-windows, updated to to include the RigidAlignment change
- Open a pull request into SlicerSALT with the updates from above.
Thanks for your informative feedback @Connor-Bowley.
Additionally, I also noticed that “Correspondance Improvment” section in the SHARM-PDM Generator module is not working properly even after uploading the required material !
We will be able to proceed with our data processing - using SlicerSALT modules - in Windows - once these issues is fixed. Hopefully soon.
Thanks again for your hard work.
I opened the following pull request into the SlicerSALT repo that should fix this problem.
This issue should be fixed in
SlicerSALT-3.0.0-2022-09-16 which can be downloaded by going to Download • SlicerSALT, clicking
Visit Girder -> Nightly -> SlicerSALT-3.0.0-2022-09-16-win-amd64.exe. Please try it out and let me know if you are still having problems.