Operating system: macOS High Sierra (10.13.6)
Slicer version: 4.11.20200930
Expected behavior:
Actual behavior:
Hi everyone,
I have a problem with the syntax of the parameter file for the Radiomics module. I attach the .yaml file that I have already created.
# It is written according to the YAML-convention (www.yaml.org) and is checked by the code for consistency.
imageType:
Original: {} # unfiltered image
setting:
binWidth: 2
#distances between the center voxel and the neighbor, for which angles should be generated.
distance: [[3]]
#z-score normalisation
normalize: True
# Featureclasses, from which features must be calculated. If a feature class is not mentioned, no features are calculated
featureClass:
shape:
firstorder:
glcm:
glrlm:
glszm:
gldm:
I have two questions, the first one is about standardization. I saw on the documentation that if I set “true” for normalization, we use z-score normalization. I would like to know how to set the +/- 3 sigma normalization, i.e. what sentence to write to access this normalization ?
My second question is about the distance between the neighbors for the calculation of the texture parameters. The syntax indicated in my code does not work, I tried several possibilities but they do not work either. What should I write ?
Thank you so much for your answers,
Marion